Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq384607 107 3e-17 seq444504 87.8 3e-11 >seq384607 Length=248 Score = 107 bits (118), Expect = 3e-17 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 724986 TCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCC 725045 || ||||| |||||| | | || ||||||| | ||||| || || ||||| | || | Sbjct 1 TCCTTTGTGAACGACCTCTTTGAGCGCATCGCCGCCGAGTCCTCCCGTCTGGCCCACTAC 60 Query 725046 AACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGC 725105 |||||| | ||| ||| | | || || ||||||||||||||| | ||| || | | Sbjct 61 AACAAGAGATCCACCATCACCTCCCGGGAAATCCAGACCGCCGTGAGGCTGCTCCTCCCT 120 Query 725106 GGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||||||| |||||||||||| |||||||||| Sbjct 121 GGTGAGCTGGCCAAGCACGCCGTCTCTGAGGGCACCA 157 >seq444504 Length=215 Score = 87.8 bits (96), Expect = 3e-11 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || ||||||||||| |||| || |||| |||| || Sbjct 190 CCATGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGTATCGCTTCCGAAGC-- 133 Query 725029 GTCGCCTGGCGCGCTCC--AACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 |||| | | |||||| |||||| || |||||| | ||||| |||||||| || Sbjct 132 TTCGCGTCTCTCGCTCCAGAACAAGAAGAAAACGATCTCGTCTCGCGAAATCCAGACTGC 73 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || || ||| || ||| |||||| ||| || ||| ||| || |||| Sbjct 72 AGTTCGTCTCCTCTTGCCTGGTGAATTGGCCAAGCATGCTGTCAGCGAAGGAACCA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7131680118469522