Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq179216 109 7e-19 seq58769 109 7e-19 seq11070 107 3e-18 >seq179216 Length=2336 Score = 109 bits (120), Expect = 7e-19 Identities = 294/440 (67%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 163050 TGGAATATACGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAAAGACTACTTGAACAA 163109 ||| ||||| || ||||| ||||| ||| | || | |||||||| ||| || | | Sbjct 917 TGGTATATATGAACCAGGCAAACGCCATTGGTTGAAGGTGAAGAAAGATTACCTGCTCCA 858 Query 163110 TGGTTCAATGGCAGACTCTGCAGATTTAGTAGTACTTGGGGCATATTATGGAAAAGGAAT 163169 ||| ||||||| ||||| || |||||||| || ||||| || |||| |||| || | Sbjct 857 AGGTACAATGGCTGACTCAGCTGATTTAGTCGTTCTTGGAGCTTATTTCGGAACGGGCAC 798 Query 163170 AAAGGGTGGAATGATGGCTGTCTTTTTGATGGGTTGCTATGATGACGAGTCTGGTAAATG 163229 || || || |||||| |||| ||||||||||| || ||||| | | || | || Sbjct 797 CAAAGGCGGGATGATGTCTGTGTTTTTGATGGGATGTTATGACAAGAAACGTGATGTTTG 738 Query 163230 GAAGACAGTAACTAAA-TGTTC--CGGACACGATGAT--AATACGTTAAGGGTTCTACAA 163284 | |||||||| ||| || | ||||||||| ||| || || ||| | || |||| Sbjct 737 GTGCACAGTAACCAAAGTGGGCAACGGACACGACGATCAAACACTCGAAGAGATCAACAA 678 Query 163285 GACCAATTAAAGATGATTAAAATTAGTAAGGATCCaaaaaaaGTACCAGAGTGGTTGGTA 163344 | | | |||| | ||| || || || || || | ||| || |||| || Sbjct 677 -AACTCTCAAAG-TTTCTAAGATCAGCAAAGACTATAACAGAGTTCCTTCGTGGCTGAAT 620 Query 163345 GTTAATAAAATCTATATTCCAGATTTTGTAGCAGAGGATCCAAAACAATCTCCTATCTGG 163404 || || || || | || |||||||| | | ||||| ||||||||| | ||| Sbjct 619 GTCAACCGTATGCATGTGCCTGATTTTGTGGTTGTAGATCC--TACAATCTCCGGTTTGG 562 Query 163405 GAAATTTCAGGAGCTGAGTTTACTTCATCCAAATCT-CATACAGCAAATGGAATATCCAT 163463 || ||| || | || || || || | |||| || || ||| ||||| | || || Sbjct 561 GAGATTGTGGGCACCGAATTCACAAAAT-CGGATCTCCACACTGCAGATGGACTCTCAAT 503 Query 163464 TAGATTTCCTAGATTTACTA 163483 | | || |||||| | |||| Sbjct 502 TCGCTTCCCTAGAGTCACTA 483 >seq58769 Length=2336 Score = 109 bits (120), Expect = 7e-19 Identities = 294/440 (67%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 163050 TGGAATATACGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAAAGACTACTTGAACAA 163109 ||| ||||| || ||||| ||||| ||| | || | |||||||| ||| || | | Sbjct 917 TGGTATATATGAACCAGGCAAACGCCATTGGTTGAAGGTGAAGAAAGATTACCTGCTCCA 858 Query 163110 TGGTTCAATGGCAGACTCTGCAGATTTAGTAGTACTTGGGGCATATTATGGAAAAGGAAT 163169 ||| ||||||| ||||| || |||||||| || ||||| || |||| |||| || | Sbjct 857 AGGTACAATGGCTGACTCAGCTGATTTAGTCGTTCTTGGAGCTTATTTCGGAACGGGCAC 798 Query 163170 AAAGGGTGGAATGATGGCTGTCTTTTTGATGGGTTGCTATGATGACGAGTCTGGTAAATG 163229 || || || |||||| |||| ||||||||||| || ||||| | | || | || Sbjct 797 CAAAGGCGGGATGATGTCTGTGTTTTTGATGGGATGTTATGACAAGAAACGTGATGTTTG 738 Query 163230 GAAGACAGTAACTAAA-TGTTC--CGGACACGATGAT--AATACGTTAAGGGTTCTACAA 163284 | |||||||| ||| || | ||||||||| ||| || || ||| | || |||| Sbjct 737 GTGCACAGTAACCAAAGTGGGCAACGGACACGACGATCAAACACTCGAAGAGATCAACAA 678 Query 163285 GACCAATTAAAGATGATTAAAATTAGTAAGGATCCaaaaaaaGTACCAGAGTGGTTGGTA 163344 | | | |||| | ||| || || || || || | ||| || |||| || Sbjct 677 -AACTCTCAAAG-TTTCTAAGATCAGCAAAGACTATAACAGAGTTCCTTCGTGGCTGAAT 620 Query 163345 GTTAATAAAATCTATATTCCAGATTTTGTAGCAGAGGATCCAAAACAATCTCCTATCTGG 163404 || || || || | || |||||||| | | ||||| ||||||||| | ||| Sbjct 619 GTCAACCGTATGCATGTGCCTGATTTTGTGGTTGTAGATCC--TACAATCTCCGGTTTGG 562 Query 163405 GAAATTTCAGGAGCTGAGTTTACTTCATCCAAATCT-CATACAGCAAATGGAATATCCAT 163463 || ||| || | || || || || | |||| || || ||| ||||| | || || Sbjct 561 GAGATTGTGGGCACCGAATTCACAAAAT-CGGATCTCCACACTGCAGATGGACTCTCAAT 503 Query 163464 TAGATTTCCTAGATTTACTA 163483 | | || |||||| | |||| Sbjct 502 TCGCTTCCCTAGAGTCACTA 483 >seq11070 Length=7227 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || |||| || | || || ||||||||||| || || ||||| | ||| Sbjct 4716 TGAAATTCGCCGGATAGAACACGTCGTGTATAAATATTACTTGTGTACGGTTCAATTGAT 4657 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || |||||||| ||||| || || ||||||||||| ||||| ||||||| || |||||| Sbjct 4656 TCGTTATTTCCAAGAATCTGTGCGGTTGATGCAGTCGGCATGGGTGCCATCAGTAAACTG 4597 Query 68839 TT 68840 || Sbjct 4596 TT 4595 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||||||||| ||||||| |||| | || |||| | ||| || ||||| | Sbjct 6096 TCCACCCATAGAAATGCATGCTTGTTAATTTGCCAAAATTTGGTTGGGCGATGTGAATGT 6037 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | |||||| ||||| | ||||| || | || |||||||| || || || ||| Sbjct 6036 TGAGACTTTGACTCTGATCAACAAAAGCACCCCGGTCAGCCGCCATCTTGATGATGTTCT 5977 Query 68561 TTTGAGGAATTTCCCAAA 68578 | || | ||| ||||||| Sbjct 5976 TCTGCGAAATCTCCCAAA 5959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682802107152840