Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq46785 87.8 2e-12 >seq46785 Length=3947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 130048 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 130107 ||| | ||| |||||| | || || ||||||||||| |||||||||| ||||||||| Sbjct 3 GATCAATTCGTTCGAGTAAGTTAGGCCGGGCATGAGACCTCGCTTCTTCAGCCAGAAAAT 62 Query 130108 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 ||| || || || |||||||||||| |||||| | || || || | || || || Sbjct 63 AGCAGCGAACGAACCGCTGAAGAAGATCCCTTCCACAGATGCAAAAGCGACGATTCGTTC 122 Query 130168 AGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGA 130226 | |||| || | |||| | | |||||||| ||||| | ||||| ||| | Sbjct 123 ACCAAA-ACTCGAGTTCTTGTCGTTGATCCACTTCAGGGCCCAGTTTGCCTTCTTCCGTA 181 Query 130227 TACACGGGACGGTCTGGATCGC 130248 |||||| | |||| ||||| Sbjct 182 CACACGGCATCGTCTCAATCGC 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614737877426360