Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11070 89.7 7e-13 >seq11070 Length=7227 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||||||||||||||| | |||| | || | || | ||| || ||||| | Sbjct 6096 TCCACCCATAGAAATGCATGCTTGTTAATTTGCCAAAATTTGGTTGGGCGATGTGAATGT 6037 Query 76909 TCATCGACT--GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGT 76966 | | |||| |||| ||||| | ||||| || | ||||||||||| || || ||| | Sbjct 6036 TGA--GACTTTGACTCTGATCAACAAAAGCACCCCGGTCAGCCGCCATCTTGATGATGTT 5979 Query 76967 CTTTTGAGGAATTTCCCAAA 76986 ||| || | ||| ||||||| Sbjct 5978 CTTCTGCGAAATCTCCCAAA 5959 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| || || | || | || || ||||||||||| || || ||||| | ||| Sbjct 4716 TGAAATTCGCCGGATAGAACACGTCGTGTATAAATATTACTTGTGTACGGTTCAATTGAT 4657 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||| | ||| || || || || ||||| ||||| ||||||| || |||||| Sbjct 4656 TCGTTATTTCCAAGAATCTGTGCGGTTGATGCAGTCGGCATGGGTGCCATCAGTAAACTG 4597 Query 77247 TT 77248 || Sbjct 4596 TT 4595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690515713895840