Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq179216 104 3e-17 seq58769 104 3e-17 seq11070 98.7 1e-15 >seq179216 Length=2336 Score = 104 bits (114), Expect = 3e-17 Identities = 324/492 (66%), Gaps = 11/492 (2%) Strand=Plus/Minus Query 170065 GAAGGTTTGGTTTTAAAAGATATTAATGGTATATATGAGCCAGGAAAACGTAGATGGCTT 170124 |||||| | || | ||||| | |||||||||||| ||||| ||||| ||| | Sbjct 943 GAAGGTCTTGTGCTCAAAGACGCCACTGGTATATATGAACCAGGCAAACGCCATTGGTTG 884 Query 170125 AAAATAAAGAGAGACTACTTGAATGAGGGTTCGATGGCGGATTCTGCAGATTTAGTAGTA 170184 || | |||| ||| ||| || | ||| | ||||| || || || |||||||| || Sbjct 883 AAGGTGAAGAAAGATTACCTGCTCCAAGGTACAATGGCTGACTCAGCTGATTTAGTCGTT 824 Query 170185 TTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTATTTTTGATGGGT 170244 | || || |||| |||| || || || || || |||||| | || ||||||||||| Sbjct 823 CTTGGAGCTTATTTCGGAACGGGCACCAAAGGCGGGATGATGTCTGTGTTTTTGATGGGA 764 Query 170245 TGCTACGATGACGACTCTGGTAAATGGAAGACTGTAACTAAA-TGTTC--TGGACATGAT 170301 || || || | | || | ||| || ||||| ||| || | ||||| || Sbjct 763 TGTTATGACAAGAAACGTGATGTTTGGTGCACAGTAACCAAAGTGGGCAACGGACACGAC 704 Query 170302 GAT--AACACTTTAAGGGTTTTGCAAGACCAATTAAAGATGATTAAAATAAGTAAGGATC 170359 ||| |||||| ||| | | ||| | | | |||| | ||| || || || || Sbjct 703 GATCAAACACTCGAAGAGATCAACAA-AACTCTCAAAG-TTTCTAAGATCAGCAAAGACT 646 Query 170360 CCaaaaaaaTTCCAGAGTGGTTAGTAGTTAATAAAATATATATTCCCGATTTTGTAGTAG 170419 || | | |||| |||| | || || || || | || |||||||| || | Sbjct 645 ATAACAGAGTTCCTTCGTGGCTGAATGTCAACCGTATGCATGTGCCTGATTTTGTGGTTG 586 Query 170420 AGGATCCTACACAATCTCCAATCTGGGAGATTTCAGGAGCTGAGTTCACATCATCGAAGT 170479 |||||| ||||||||| | ||||||||| || | || |||||| |||| | | Sbjct 585 TAGATCCT--ACAATCTCCGGTTTGGGAGATTGTGGGCACCGAATTCACAAAATCGGA-T 529 Query 170480 CT-CATACGGCAAATGGAATATCTATTAGATTTCCTAGATTCAGTAGGATCAGAGACGAT 170538 || || || ||| ||||| | || ||| | || |||||| ||| || || | ||||| Sbjct 528 CTCCACACTGCAGATGGACTCTCAATTCGCTTCCCTAGAGTCACTAAAATTCGCGACGAC 469 Query 170539 AAGACATGGAAA 170550 |||| ||| || Sbjct 468 AAGATCTGGGAA 457 >seq58769 Length=2336 Score = 104 bits (114), Expect = 3e-17 Identities = 324/492 (66%), Gaps = 11/492 (2%) Strand=Plus/Minus Query 170065 GAAGGTTTGGTTTTAAAAGATATTAATGGTATATATGAGCCAGGAAAACGTAGATGGCTT 170124 |||||| | || | ||||| | |||||||||||| ||||| ||||| ||| | Sbjct 943 GAAGGTCTTGTGCTCAAAGACGCCACTGGTATATATGAACCAGGCAAACGCCATTGGTTG 884 Query 170125 AAAATAAAGAGAGACTACTTGAATGAGGGTTCGATGGCGGATTCTGCAGATTTAGTAGTA 170184 || | |||| ||| ||| || | ||| | ||||| || || || |||||||| || Sbjct 883 AAGGTGAAGAAAGATTACCTGCTCCAAGGTACAATGGCTGACTCAGCTGATTTAGTCGTT 824 Query 170185 TTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTATTTTTGATGGGT 170244 | || || |||| |||| || || || || || |||||| | || ||||||||||| Sbjct 823 CTTGGAGCTTATTTCGGAACGGGCACCAAAGGCGGGATGATGTCTGTGTTTTTGATGGGA 764 Query 170245 TGCTACGATGACGACTCTGGTAAATGGAAGACTGTAACTAAA-TGTTC--TGGACATGAT 170301 || || || | | || | ||| || ||||| ||| || | ||||| || Sbjct 763 TGTTATGACAAGAAACGTGATGTTTGGTGCACAGTAACCAAAGTGGGCAACGGACACGAC 704 Query 170302 GAT--AACACTTTAAGGGTTTTGCAAGACCAATTAAAGATGATTAAAATAAGTAAGGATC 170359 ||| |||||| ||| | | ||| | | | |||| | ||| || || || || Sbjct 703 GATCAAACACTCGAAGAGATCAACAA-AACTCTCAAAG-TTTCTAAGATCAGCAAAGACT 646 Query 170360 CCaaaaaaaTTCCAGAGTGGTTAGTAGTTAATAAAATATATATTCCCGATTTTGTAGTAG 170419 || | | |||| |||| | || || || || | || |||||||| || | Sbjct 645 ATAACAGAGTTCCTTCGTGGCTGAATGTCAACCGTATGCATGTGCCTGATTTTGTGGTTG 586 Query 170420 AGGATCCTACACAATCTCCAATCTGGGAGATTTCAGGAGCTGAGTTCACATCATCGAAGT 170479 |||||| ||||||||| | ||||||||| || | || |||||| |||| | | Sbjct 585 TAGATCCT--ACAATCTCCGGTTTGGGAGATTGTGGGCACCGAATTCACAAAATCGGA-T 529 Query 170480 CT-CATACGGCAAATGGAATATCTATTAGATTTCCTAGATTCAGTAGGATCAGAGACGAT 170538 || || || ||| ||||| | || ||| | || |||||| ||| || || | ||||| Sbjct 528 CTCCACACTGCAGATGGACTCTCAATTCGCTTCCCTAGAGTCACTAAAATTCGCGACGAC 469 Query 170539 AAGACATGGAAA 170550 |||| ||| || Sbjct 468 AAGATCTGGGAA 457 >seq11070 Length=7227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||| || || | || | ||| || ||||||||||| || || ||||| | ||| Sbjct 4716 TGAAATTCGCCGGATAGAACACGTCGTGTATAAATATTACTTGTGTACGGTTCAATTGAT 4657 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || ||||| | ||| || || ||||| ||||||||||| ||||||| || |||||| Sbjct 4656 TCGTTATTTCCAAGAATCTGTGCGGTTGATGCAGTCGGCATGGGTGCCATCAGTAAACTG 4597 Query 75842 TT 75843 || Sbjct 4596 TT 4595 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||||||||||||||||| |||| | || | || | ||| || ||||| | Sbjct 6096 TCCACCCATAGAAATGCATGCTTGTTAATTTGCCAAAATTTGGTTGGGCGATGTGAATGT 6037 Query 75504 TCATCGACT--GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGT 75561 | | |||| |||| ||||| | ||||| || | ||||||||||| || || ||| | Sbjct 6036 TGA--GACTTTGACTCTGATCAACAAAAGCACCCCGGTCAGCCGCCATCTTGATGATGTT 5979 Query 75562 CTTTTGAGGAATTTCCCAAA 75581 ||| || | ||| ||||||| Sbjct 5978 CTTCTGCGAAATCTCCCAAA 5959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708672112777920