Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq61479 116 4e-21 seq8514 116 4e-21 >seq61479 Length=12598 Score = 116 bits (128), Expect = 4e-21 Identities = 211/304 (69%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || ||| || ||||| |||||||| || || || || ||||| || || | Sbjct 7118 TTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTT 7059 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||||||| ||| | | ||| ||||| |||||| ||||| || | Sbjct 7058 CCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGA 6999 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACAT-TAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || |||||||| || || | ||||| | ||| || |||||||| ||||| Sbjct 6998 GCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAGT 6940 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 || ||||||||||| | |||||| | || | | ||||||| || || || || Sbjct 6939 TTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCATT 6880 Query 16913 CTAGCAAC--TCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 | |||| | || ||||| ||| ||| | | | | | ||||| ||||| || | Sbjct 6879 TCAACAACAATGCTT--TCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGCAA 6822 Query 16971 AATC 16974 |||| Sbjct 6821 AATC 6818 >seq8514 Length=8580 Score = 116 bits (128), Expect = 4e-21 Identities = 211/304 (69%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || ||| || ||||| |||||||| || || || || ||||| || || | Sbjct 5697 TTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTT 5756 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||||||| ||| | | ||| ||||| |||||| ||||| || | Sbjct 5757 CCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGA 5816 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACAT-TAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || |||||||| || || | ||||| | ||| || |||||||| ||||| Sbjct 5817 GCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAGT 5875 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 || ||||||||||| | |||||| | || | | ||||||| || || || || Sbjct 5876 TTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCATT 5935 Query 16913 CTAGCAAC--TCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 | |||| | || ||||| ||| ||| | | | | | ||||| ||||| || | Sbjct 5936 TCAACAACAATGCTT--TCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGCAA 5993 Query 16971 AATC 16974 |||| Sbjct 5994 AATC 5997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517086834641520