Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq43997 167 4e-36 seq43996 158 2e-33 seq33280 138 2e-27 >seq43997 Length=5328 Score = 167 bits (184), Expect = 4e-36 Identities = 182/239 (76%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || || || || |||||||||||| | || |||| || | Sbjct 5294 ATGCAGATATTTGTTAAAACTCTTACTGGGAAAACTATAACTCTTGATGTTGAGTCATCT 5235 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || ||||| || || ||||| ||||| || ||||| || |||||||| Sbjct 5234 GACACAATTGAAAACGTTAAATCA-AAGATTCAGGATAAGGAGGGTATTCCTCCTGATCA 5176 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | |||||| | |||| || ||||| || Sbjct 5175 GCAAAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGAACTTTGAGCGATTACAA 5116 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||||||||||||| |||| ||||| || | |||||||| ||| || Sbjct 5115 TATTCAGAAAGAATCAACTTTGCATCTGGTATTACGATTGAGGGGTGGTATGCAAATTT 5057 Score = 158 bits (174), Expect = 2e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || |||||||||||| | || ||||| || | Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| || ||||| || || ||||| ||||| || || || || |||||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCA-AAGATTCAGGATAAGGAGGGCATTCCTCCTGATCA 4948 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | |||||| | |||| || |||||||| Sbjct 4947 GCAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAA 4888 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| || ||||||||||| | |||||| ||||||| || Sbjct 4887 TATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGGCAT 4837 >seq43996 Length=5100 Score = 158 bits (174), Expect = 2e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || || || || |||||||||||| | || ||||| || | Sbjct 5066 ATGCAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| || ||||| || || ||||| ||||| || || || || |||||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCA-AAGATTCAGGATAAGGAGGGCATTCCTCCTGATCA 4948 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | |||||| | |||| || |||||||| Sbjct 4947 GCAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAA 4888 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| || ||||||||||| | |||||| ||||||| || Sbjct 4887 TATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGGCAT 4837 >seq33280 Length=5083 Score = 138 bits (152), Expect = 2e-27 Identities = 176/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| | || || || ||||| ||| | || |||| |||| Sbjct 406 AATGCAAATATTTGTGAAGACTTTGACTGGTAAGACTATTACTCTTGATGTTGAGAGCAG 347 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || ||| ||| | ||| ||||||||||| || |||||||| || || || | Sbjct 346 -TGACACGATTGAGAATGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACC 288 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || ||||||||||| || || |||||||| ||| | | || ||| || |||| Sbjct 287 AGCAGAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGGAGGACCTTAAGCGACTATA 228 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||| || || ||| | ||| | ||| | || || ||||||| || ||| || Sbjct 227 ATATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGATTGAGAGGTGGGATGCAAATTT 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754786344915200