Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq43997 131 1e-25 seq43996 118 9e-22 seq33280 114 1e-20 >seq43997 Length=5328 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||| || |||| || | || || ||||| ||||| |||||||||| Sbjct 5066 TACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGC 5125 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||| | |||||||||||| || ||||| |||| || | |||||||| |||| Sbjct 5126 TCAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAG 5185 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| || ||| ||| |||||| | ||| | ||||| | ||| | Sbjct 5186 GAATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAA 5245 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||||| || || |||||||| ||||| ||||||||| Sbjct 5246 CATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCATG 5295 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || | ||| | || ||||| || | || || || ||||| || || ||||| ||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | |||||||||||| || || || |||| || | |||||||| ||||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||||||||| || ||| ||| |||||| | ||||| ||||| | || | || || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGAT-TCAAC 5018 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || |||||||| |||||||| ||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq43996 Length=5100 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || | ||| | || ||||| || | || || || ||||| || || ||||| ||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | |||||||||||| || || || |||| || | |||||||| ||||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||||||||| || ||| ||| |||||| | ||||| ||||| | || | || || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGAT-TCAAC 5018 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || || |||||||| ||||| ||||||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCATG 5067 >seq33280 Length=5083 Score = 114 bits (126), Expect = 1e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 118563 TAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGA 118622 ||||| |||| || | | |||||| ||||||||||||||| | || || | ||||||| Sbjct 2 TAATCACTCAAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGA 61 Query 118623 TCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-T 118681 || ||||| || ||||||||||| ||||||| ||| || | ||| | |||||| | | Sbjct 62 TCAGGAGGAATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGAT 121 Query 118682 GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | | || || || | || | ||||| ||||| | ||||| |||||||| ||||| Sbjct 122 GAT-TCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433455455840488