Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq43997 107 2e-18 seq43996 102 9e-17 seq33280 91.5 2e-13 >seq43997 Length=5328 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||||| |||||||||| ||| |||||||| ||||| |||||| | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || || |||||||| || || || || || | ||||| || | || Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||| ||| ||| | |||| || | || | | | ||||| ||||| || Sbjct 4960 ATGCCCTCCTTATCC-TGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAAC 5018 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | || || ||||| || || || || || ||||| |||||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq43996 Length=5100 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||||| |||||||||| ||| |||||||| ||||| |||||| | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || || |||||||| || || || || || | ||||| || | || Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||| ||| ||| | |||| || | || | | | ||||| ||||| || Sbjct 4960 ATGCCCTCCTTATCC-TGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAAC 5018 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | || || ||||| || || || || || ||||| || ||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 >seq33280 Length=5083 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 43008 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 43067 |||||| || || | | | || || ||||| || |||||||| || |||| |||||| Sbjct 2 TAATCACTCAAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGA 61 Query 43068 TCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCT 43126 || | || | | |||||||||| ||| ||||||||| ||| || | |||| Sbjct 62 TCAGGAGGAATTCCCTCCTTGTCC-TGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGA 120 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || | ||||||||||| || |||| ||| || ||||| |||||||| Sbjct 121 TGATTCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| || || | |||| | | || |||| ||||||||||| || Sbjct 214 CTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAA 273 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || |||| ||||||||| | || | | ||||||| | ||| |||| | ||| | Sbjct 274 AATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGT-CTTGAATTTTAGATTTAACAT 332 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | |||||| || || ||||| | || || || || || || | ||||| | Sbjct 333 TCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCA 392 Query 43171 CAAAGATTTGCATT 43184 |||| ||||||||| Sbjct 393 CAAATATTTGCATT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571310726583920