Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq43997 95.1 2e-14 seq43996 95.1 2e-14 seq33280 89.7 8e-13 >seq43997 Length=5328 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || | ||| | |||||||||||||| |||||||| || ||||| || Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || |||||||| || || || |||||||| || |||||||||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 4732 ATACCCTCCTTATCCTG 4748 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | || |||||||| ||| ||||| |||||||| ||||| ||||| Sbjct 5068 CCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTC 5127 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || | || || |||||||| || | ||||||||||| |||||| Sbjct 5128 AAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGA 5187 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 5188 ATACCCTCCTTATCCTG 5204 >seq43996 Length=5100 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || | ||| | |||||||||||||| |||||||| || ||||| || Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || |||||||| || || || |||||||| || |||||||||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 4732 ATACCCTCCTTATCCTG 4748 >seq33280 Length=5083 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | || | || | ||||| |||||| || ||| || |||||||| || Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGA-ATATTATAGTCGCT 237 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || || | ||| |||||||| || ||||||||||| | ||| ||||| || ||||| Sbjct 238 TAAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGG 297 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 298 AATACCTTCCTTGTCTTG 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742867319610880