Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq61479 150 2e-31 seq8514 150 2e-31 >seq61479 Length=12598 Score = 150 bits (166), Expect = 2e-31 Identities = 353/535 (66%), Gaps = 47/535 (9%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAG--AGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 |||||||||| |||| || ||||||||| || | | | ||||||| ||| Sbjct 7177 TTAAAAATCAGTATCCAGTGAGAAAACACGTT--CCTCGGCACTTGACATCACTCCTGGC 7120 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||||||||| ||| | ||||||||| || || || || ||||| | || || ||| Sbjct 7119 TTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTT 7060 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||||||||||||||| || | | | || ||| | | || | ||| | || Sbjct 7059 TCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATG 7000 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCAT-TAAATCACAGTTCATTCCTATTAA 16122 | ||||| || |||||||| || || | ||| | ||||| |||||||| || | Sbjct 6999 AGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAG 6941 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 ||||||||| | ||||| | ||||| | ||||| | || |||||| || |||| || Sbjct 6940 TTTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT 6881 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGTTTAAACATTATACAAG 16238 || || ||| | || |||| |||||| | || | | ||||| | ||| | Sbjct 6880 TTC---AACAACAATGCTT-TCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGG 6825 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 ||||||| ||| | ||||| || | ||||||||||||||| | ||||| |||| Sbjct 6824 CAAAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTG 6765 Query 16299 GCATTAGTCC---------------------------------TCGTTTTTTAATCCAAA 16325 |||| || || ||||| || | ||| | Sbjct 6764 GCATGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGA 6705 Query 16326 ATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAAC 16380 | || || || |||||||||||||| ||||| || ||||| || ||||||||||| Sbjct 6704 AAATTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGCAAC 6650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACAT 16779 ||||||||| | ||| ||||| ||| || |||||||||| ||||||||||| |||||||| Sbjct 3604 ATCTTTTGACAGATCAACCTCCTCTGCAATCCAAAAAGAGGCAACAGCCTTCTTATACAT 3545 Query 16780 TTTCCATATGTCTTCGTAAACAATAGGAAA 16809 | ||| ||||| | | ||| || ||||| Sbjct 3544 GTGCCAGATGTCATGATGAACGATGGGAAA 3515 >seq8514 Length=8580 Score = 150 bits (166), Expect = 2e-31 Identities = 353/535 (66%), Gaps = 47/535 (9%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAG--AGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 |||||||||| |||| || ||||||||| || | | | ||||||| ||| Sbjct 5638 TTAAAAATCAGTATCCAGTGAGAAAACACGTT--CCTCGGCACTTGACATCACTCCTGGC 5695 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||||||||| ||| | ||||||||| || || || || ||||| | || || ||| Sbjct 5696 TTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTT 5755 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||||||||||||||| || | | | || ||| | | || | ||| | || Sbjct 5756 TCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATG 5815 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCAT-TAAATCACAGTTCATTCCTATTAA 16122 | ||||| || |||||||| || || | ||| | ||||| |||||||| || | Sbjct 5816 AGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAG 5874 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 ||||||||| | ||||| | ||||| | ||||| | || |||||| || |||| || Sbjct 5875 TTTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT 5934 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGTTTAAACATTATACAAG 16238 || || ||| | || |||| |||||| | || | | ||||| | ||| | Sbjct 5935 TTC---AACAACAATGCTT-TCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGG 5990 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 ||||||| ||| | ||||| || | ||||||||||||||| | ||||| |||| Sbjct 5991 CAAAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTG 6050 Query 16299 GCATTAGTCC---------------------------------TCGTTTTTTAATCCAAA 16325 |||| || || ||||| || | ||| | Sbjct 6051 GCATGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGA 6110 Query 16326 ATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAAC 16380 | || || || |||||||||||||| ||||| || ||||| || ||||||||||| Sbjct 6111 AAATTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGCAAC 6165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462102017800400