Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq61479 89.7 5e-13 seq8514 89.7 5e-13 >seq61479 Length=12598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 299/471 (63%), Gaps = 41/471 (9%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||||||||| ||| | |||||||| ||||| || || ||||| || || || ||| Sbjct 7119 TTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTT 7060 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 |||||||||||||| || || | ||| | ||| | || ||||||| | Sbjct 7059 TCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATG 7000 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACAT-TAAATCACAATTCATACCTATTAG 14091 | ||||| |||| || ||||| || | | |||| | |||| |||||| || || || Sbjct 6999 AGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCAC-ATTCATTCCAATAAG 6941 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 ||| ||||||| | | |||||||| ||||| | | || || || || || || Sbjct 6940 TTTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT 6881 Query 14152 ---AATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 14208 || ||| |||| ||||| || | | | | | || || | ||| || Sbjct 6880 TTCAACAACAATGCTTTC---GGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGC 6824 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 |||||| |||||| || ||||| | ||| || | ||||| | || | |||||| Sbjct 6823 AAAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGG 6764 Query 14269 CATCAATCC---------------------------------TCGtttttttAACCAAAA 14295 ||| | || ||||| || | ||| || Sbjct 6763 CATGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAA 6704 Query 14296 TATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 |||||||||||||| || ||||| |||||||||||||| || ||||| || Sbjct 6703 AATTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGC 6653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||| ||| |||||||||| ||||| || | | || | ||||| || || || Sbjct 3985 ATCCAGTTTAGGGCCCATTCAGCCTTTTTCTTGACAGAAGGAAGGGTTTCGATGGCTTTG 3926 Query 14444 AATAA---ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || || || ||| |||| | | | ||| || |||| |||||||| | || || ||| Sbjct 3925 AACAACCTAT-TTCGTTCT-TCGATTTCTTTAA-TGTACGTATCAATCAACAAACTGTAC 3869 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 ||||||||||| || ||||||| || || || || || || |||||||| ||||||| Sbjct 3868 ATTTCAGAGTGGATATTTTCCACCGCAATTTGGAACCCGTAGAAACATCTTGCTTCTG 3811 >seq8514 Length=8580 Score = 89.7 bits (98), Expect = 5e-13 Identities = 299/471 (63%), Gaps = 41/471 (9%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||||||||| ||| | |||||||| ||||| || || ||||| || || || ||| Sbjct 5696 TTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTT 5755 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 |||||||||||||| || || | ||| | ||| | || ||||||| | Sbjct 5756 TCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATG 5815 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACAT-TAAATCACAATTCATACCTATTAG 14091 | ||||| |||| || ||||| || | | |||| | |||| |||||| || || || Sbjct 5816 AGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCAC-ATTCATTCCAATAAG 5874 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 ||| ||||||| | | |||||||| ||||| | | || || || || || || Sbjct 5875 TTTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT 5934 Query 14152 ---AATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 14208 || ||| |||| ||||| || | | | | | || || | ||| || Sbjct 5935 TTCAACAACAATGCTTTC---GGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGC 5991 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 |||||| |||||| || ||||| | ||| || | ||||| | || | |||||| Sbjct 5992 AAAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGG 6051 Query 14269 CATCAATCC---------------------------------TCGtttttttAACCAAAA 14295 ||| | || ||||| || | ||| || Sbjct 6052 CATGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAA 6111 Query 14296 TATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 |||||||||||||| || ||||| |||||||||||||| || ||||| || Sbjct 6112 AATTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGC 6162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481918036801520