Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq43997 86.0 5e-12 seq43996 86.0 5e-12 >seq43997 Length=5328 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||||||| | ||| || |||| ||| ||||| |||||||| |||||||| |||||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTG--GATTCTTTCTGAATGTTATAGTCGC 4669 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | |||| | | ||| ||||||||||| || || | || | ||| ||||||||| | Sbjct 4670 TTAATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAG 4729 Query 18217 GCACGCCTTCCTTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 | | || |||||||| ||||| ||| || || | ||| || ||| | ||| Sbjct 4730 GAATACCCTCCTTATCCTGAATTTTCGTT--TTAACGTTCTCAATCGTATCAGAAGACTC 4787 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || |||| || || | ||||| ||||| || ||||| Sbjct 4788 AACGTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43996 Length=5100 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||||||| | ||| || |||| ||| ||||| |||||||| |||||||| |||||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTG--GATTCTTTCTGAATGTTATAGTCGC 4669 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | |||| | | ||| ||||||||||| || || | || | ||| ||||||||| | Sbjct 4670 TTAATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAG 4729 Query 18217 GCACGCCTTCCTTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 | | || |||||||| ||||| ||| || || | ||| || ||| | ||| Sbjct 4730 GAATACCCTCCTTATCCTGAATTTTCGTT--TTAACGTTCTCAATCGTATCAGAAGACTC 4787 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || |||| || || | ||||| ||||| || ||||| Sbjct 4788 AACGTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379016146494930