Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq43997 91.5 1e-13 seq43996 82.4 6e-11 >seq43997 Length=5328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||||||||| | || || ||||| ||||| | ||||| || || Sbjct 5295 CATGCAGATATTTGTTAAAACTCTTACTGGGAAAACTATAACTCTTGATGTTGAGTCATC 5236 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTA--CCGGTTGAC 24948 |||| | |||| ||||| ||| ||| | | | ||| ||| ||| || ||| Sbjct 5235 TGACACAATTGAAAACGTTAAATCAAAGATT-CAGGATAAGGAGG-GTATTCCTCCTGAT 5178 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 |||||| | | || | ||| ||||| || || || ||| | ||| ||| ||||||| Sbjct 5177 CAGCAAAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGAACTTTGAGCGATTAC 5118 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | || |||||||| | || | ||| | || ||||||||| | || ||| Sbjct 5117 AATATTCAGAAAGAATCAACTTTGCATCTGGTATTACGATTGAGGGGTGGT 5067 >seq43996 Length=5100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||||||||| | || || ||||| ||||| | ||||| ||||| Sbjct 5067 CATGCAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATC 5008 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||||| ||| ||| | || || ||| | || ||| || Sbjct 5007 TGACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCA 4948 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 |||| | | || | ||||||||| || || || ||| | || ||| ||||| | Sbjct 4947 GCAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAA 4888 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGT 25040 ||||| || || |||| || ||||| || Sbjct 4887 TATACAAAAGGAATCCACCCTGCATTTGGT 4858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417942474754880