Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq61479 105 6e-18 seq8514 105 6e-18 >seq61479 Length=12598 Score = 105 bits (116), Expect = 6e-18 Identities = 203/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| ||| | ||| |||||| || || | || || || || ||| Sbjct 7176 TAAAAATCAGTATCCAGTGAGAAAACACGTTCCTCGGCACTTGACATCACTCCTGGCTTT 7117 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| ||| | |||||||| ||||| || || ||||| || || || |||||| Sbjct 7116 TGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCC 7057 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||||||||| || || | | ||| | ||| | || ||||||| | | Sbjct 7056 ATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGC 6997 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACAT-TAAATCACAATTCATACCTATTAGTTT 13762 |||||||||| ||| ||||| || | | |||| | |||| |||||| || || ||||| Sbjct 6996 CTATCAGCAACAAATTCAATGTAATCACACATATCCTTCAC-ATTCATTCCAATAAGTTT 6938 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||||||| | | |||||||| ||||| | | || || ||||| || || Sbjct 6937 AACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT 6881 >seq8514 Length=8580 Score = 105 bits (116), Expect = 6e-18 Identities = 203/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| ||| | ||| |||||| || || | || || || || ||| Sbjct 5639 TAAAAATCAGTATCCAGTGAGAAAACACGTTCCTCGGCACTTGACATCACTCCTGGCTTT 5698 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| ||| | |||||||| ||||| || || ||||| || || || |||||| Sbjct 5699 TGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCC 5758 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||||||||| || || | | ||| | ||| | || ||||||| | | Sbjct 5759 ATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGC 5818 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACAT-TAAATCACAATTCATACCTATTAGTTT 13762 |||||||||| ||| ||||| || | | |||| | |||| |||||| || || ||||| Sbjct 5819 CTATCAGCAACAAATTCAATGTAATCACACATATCCTTCAC-ATTCATTCCAATAAGTTT 5877 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||||||| | | |||||||| ||||| | | || || ||||| || || Sbjct 5878 AACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT 5934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479302757107600