Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq61479 109 5e-19 seq8514 109 5e-19 >seq61479 Length=12598 Score = 109 bits (120), Expect = 5e-19 Identities = 335/525 (64%), Gaps = 35/525 (7%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| ||| | ||| |||||| || || | || || || || ||| Sbjct 7176 TAAAAATCAGTATCCAGTGAGAAAACACGTTCCTCGGCACTTGACATCACTCCTGGCTTT 7117 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| ||| | |||||||||||||| || || ||||| || || || |||||| Sbjct 7116 TGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCC 7057 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 |||||||| || || || | ||| | ||| | || ||||||| | | Sbjct 7056 ATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGC 6997 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACAT-TAAATCACAATTCATACCTATTAGTTT 13550 |||||||||| ||| ||||| || | | |||| | |||| |||||| || || ||||| Sbjct 6996 CTATCAGCAACAAATTCAATGTAATCACACATATCCTTCAC-ATTCATTCCAATAAGTTT 6938 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||||| | | | |||||||| ||||| | | || || || || || || Sbjct 6937 AACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCATTTC 6878 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 || |||| | ||||| || | | | | | || || | ||| |||||||| Sbjct 6877 AACAACAATGCTTTCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGCAAAATC 6818 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 |||||| || ||||| | ||| || | ||||| | || | ||||||||| | Sbjct 6817 TGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGGCATGAG 6758 Query 13731 TCC---------------------------------TCGtttttttAACCAAAATATTGC 13757 || ||||| || | ||| || ||||| Sbjct 6757 ACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAAAATTGC 6698 Query 13758 AGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 ||||||||| || ||||| |||||||||||||| || ||||| || Sbjct 6697 AGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGC 6653 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/178 (73%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||| ||| |||||||||| ||||| || | | || | |||||||| || ||| Sbjct 3985 ATCCAGTTTAGGGCCCATTCAGCCTTTTTCTTGACAGAAGGAAGGGTTTCGATGGCTTTG 3926 Query 13900 AATAA---ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 || || || ||| |||| | | | ||| || |||| |||||||| | || || ||| Sbjct 3925 AACAACCTAT-TTCGTTCT-TCGATTTCTTTAA-TGTACGTATCAATCAACAAACTGTAC 3869 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||||||||| || ||||| | || || || || || || |||||||| ||||||| Sbjct 3868 ATTTCAGAGTGGATATTTTCCACCGCAATTTGGAACCCGTAGAAACATCTTGCTTCTG 3811 >seq8514 Length=8580 Score = 109 bits (120), Expect = 5e-19 Identities = 335/525 (64%), Gaps = 35/525 (7%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| ||| | ||| |||||| || || | || || || || ||| Sbjct 5639 TAAAAATCAGTATCCAGTGAGAAAACACGTTCCTCGGCACTTGACATCACTCCTGGCTTT 5698 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| ||| | |||||||||||||| || || ||||| || || || |||||| Sbjct 5699 TGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCC 5758 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 |||||||| || || || | ||| | ||| | || ||||||| | | Sbjct 5759 ATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGC 5818 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACAT-TAAATCACAATTCATACCTATTAGTTT 13550 |||||||||| ||| ||||| || | | |||| | |||| |||||| || || ||||| Sbjct 5819 CTATCAGCAACAAATTCAATGTAATCACACATATCCTTCAC-ATTCATTCCAATAAGTTT 5877 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||||| | | | |||||||| ||||| | | || || || || || || Sbjct 5878 AACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCATTTC 5937 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 || |||| | ||||| || | | | | | || || | ||| |||||||| Sbjct 5938 AACAACAATGCTTTCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGCAAAATC 5997 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 |||||| || ||||| | ||| || | ||||| | || | ||||||||| | Sbjct 5998 TGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGGCATGAG 6057 Query 13731 TCC---------------------------------TCGtttttttAACCAAAATATTGC 13757 || ||||| || | ||| || ||||| Sbjct 6058 ACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAAAATTGC 6117 Query 13758 AGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 ||||||||| || ||||| |||||||||||||| || ||||| || Sbjct 6118 AGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGC 6162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478164566922960