Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq33280 104 2e-17 seq43997 96.9 4e-15 >seq33280 Length=5083 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| | ||| | ||||| || ||||| || || || ||||| Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTT 238 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||||| | ||| ||||||||| | || || | ||||| || ||||| Sbjct 239 AAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 298 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | || | |||||| || || || Sbjct 299 ATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACA 358 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || ||||| || || || ||||||||||| Sbjct 359 TCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCAT 405 >seq43997 Length=5328 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || || || || | ||| | || |||||||| || || ||||||||||||| || || Sbjct 5077 AATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTCTT 5136 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 || ||||| || || |||||| |||| || | ||||||||| ||||| || || || Sbjct 5137 CCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCC 5196 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 || || ||| ||| ||| | | ||| | ||||| | | || || |||| ||| Sbjct 5197 TTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTT 5256 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || || | ||||| || ||||| ||||| Sbjct 5257 ATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506564969760480