Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq61479 122 7e-23 seq8514 122 7e-23 >seq61479 Length=12598 Score = 122 bits (134), Expect = 7e-23 Identities = 342/529 (65%), Gaps = 41/529 (8%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTT 12861 |||||||||| |||| || || || ||| || || | ||||||| || || Sbjct 7177 TTAAAAATCAGTATCCAGTGAGAAAACACGTTCCTCGGCACTTGACATCACTCCTGGCTT 7118 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| ||| | |||||||||||||| || || ||||| | || || ||||| Sbjct 7117 TTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTC 7058 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 ||||||||| ||||| || | | | || ||| | |||| | ||||| | | Sbjct 7057 CATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAG 6998 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCAT-TAAATCACAGTTCATTCCTATTAATT 13040 || ||||||||||| || ||||| | ||| | ||||| |||||||| || | || Sbjct 6997 CCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAGTT 6939 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 | ||||| | |||||| | ||||| | ||||| | |||||| || || | | || | Sbjct 6938 TAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCATTT 6879 Query 13101 CTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA---AACATCATACATGCAA 13157 | | | | | || | || |||| || | |||| ||||| | ||| |||| Sbjct 6878 CAACAACAATGCTTTCGGAAGGTTTATTT-ATCAA--CTTACTGAACATAAGACAGGCAA 6822 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 |||| || | |||||||| | |||||||| |||||| | || || || |||| Sbjct 6821 AATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGGCA 6762 Query 13218 TAAGCCC---------------------------------TCGTTTTTTAATCCAAAATA 13244 | || || ||||| || | ||| || | Sbjct 6761 TGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAAAA 6702 Query 13245 TAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||||| || ||||| |||||||||||||| ||||| |||||||| || Sbjct 6701 TTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGC 6653 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 13636 ATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 ||||||||| | ||| |||||||| | |||||||||| |||||||||||||||||||| Sbjct 3604 ATCTTTTGACAGATCAACCTCCTCTGCAATCCAAAAAGAGGCAACAGCCTTCTTATACAT 3545 Query 13696 CATCCATATATCCTTATAAACAATGGGAAA 13725 ||| || || | || ||| |||||||| Sbjct 3544 GTGCCAGATGTCATGATGAACGATGGGAAA 3515 >seq8514 Length=8580 Score = 122 bits (134), Expect = 7e-23 Identities = 342/529 (65%), Gaps = 41/529 (8%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTT 12861 |||||||||| |||| || || || ||| || || | ||||||| || || Sbjct 5638 TTAAAAATCAGTATCCAGTGAGAAAACACGTTCCTCGGCACTTGACATCACTCCTGGCTT 5697 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| ||| | |||||||||||||| || || ||||| | || || ||||| Sbjct 5698 TTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTC 5757 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 ||||||||| ||||| || | | | || ||| | |||| | ||||| | | Sbjct 5758 CATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAG 5817 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCAT-TAAATCACAGTTCATTCCTATTAATT 13040 || ||||||||||| || ||||| | ||| | ||||| |||||||| || | || Sbjct 5818 CCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAGTT 5876 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 | ||||| | |||||| | ||||| | ||||| | |||||| || || | | || | Sbjct 5877 TAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCATTT 5936 Query 13101 CTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA---AACATCATACATGCAA 13157 | | | | | || | || |||| || | |||| ||||| | ||| |||| Sbjct 5937 CAACAACAATGCTTTCGGAAGGTTTATTT-ATCAA--CTTACTGAACATAAGACAGGCAA 5993 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 |||| || | |||||||| | |||||||| |||||| | || || || |||| Sbjct 5994 AATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGGCA 6053 Query 13218 TAAGCCC---------------------------------TCGTTTTTTAATCCAAAATA 13244 | || || ||||| || | ||| || | Sbjct 6054 TGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAAAA 6113 Query 13245 TAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||||| || ||||| |||||||||||||| ||||| |||||||| || Sbjct 6114 TTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGC 6162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430609917265428