Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq43997 163 7e-35 seq33280 156 1e-32 seq43996 149 1e-30 seq50184 91.5 3e-13 seq15988 91.5 3e-13 >seq43997 Length=5328 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| || || ||||||||||||||||| || || | |||||| || || || Sbjct 5085 TACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTCTTCCATCCTC 5144 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || |||||||| || ||||| || ||||||||||| || || || |||||||| Sbjct 5145 GAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCCTTATCCTG 5204 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||||| ||| || ||||| | || || | || || || || || ||||| || Sbjct 5205 AATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTTATAGTTTT 5264 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| |||||||||||||| Sbjct 5265 CCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || | |||||| || |||||||||||||| |||||||| || ||||| || Sbjct 4624 CTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCA 4683 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 || || | |||||| || || || || | ||||||||||| ||||| || || || ||| Sbjct 4684 TCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTA 4743 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 |||||||| || | ||| || || || | ||||| || || || || || || || Sbjct 4744 TCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATT 4803 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| |||||||||||||| Sbjct 4804 GTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| | || || | ||| | || ||||| || || |||||||| ||| Sbjct 4837 ATGCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCA 4896 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| || || || || || || || ||||| || ||||| || ||||||||| Sbjct 4897 CTCAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGA 4956 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||||||||||| ||| || ||||| | || || | ||| Sbjct 4957 GGAATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCA 5016 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || |||||||| ||||| ||||| || ||||| Sbjct 5017 ACATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq33280 Length=5083 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||| || ||||||| ||||| || || |||||||||||||| Sbjct 176 ATCCCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCG 235 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || ||||||| ||| || ||||||||||| || ||||| || || ||| Sbjct 236 CTTAAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGA 295 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || | ||| ||||| || | || || || || Sbjct 296 GGAATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCA 355 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||||||||||||||| | || || |||||||| |||||| Sbjct 356 ACATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 116 bits (128), Expect = 9e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 ||||| || || || || ||||||||||| ||||| || ||||| ||||||||||| ||| Sbjct 14 GTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGAATT 73 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || || || |||||||| |||| ||| || ||||| | ||| || | ||| || || Sbjct 74 CCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACGTCA 133 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || | ||||| ||||| || ||||| Sbjct 134 AGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 >seq43996 Length=5100 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| | || || | ||| | || ||||| || || |||||||| ||| Sbjct 4837 ATGCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCA 4896 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| || || || || || || || ||||| || ||||| || ||||||||| Sbjct 4897 CTCAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGA 4956 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||||||||||| ||| || ||||| | || || | ||| Sbjct 4957 GGAATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCA 5016 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || |||||||| ||||| |||||||||||||| Sbjct 5017 ACATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || | |||||| || |||||||||||||| |||||||| || ||||| || Sbjct 4624 CTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCA 4683 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 || || | |||||| || || || || | ||||||||||| ||||| || || || ||| Sbjct 4684 TCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTA 4743 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 |||||||| || | ||| || || || | ||||| || || || || || || || Sbjct 4744 TCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATT 4803 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| |||||||||||||| Sbjct 4804 GTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq50184 Length=1264 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTA-G 238684 || |||||| | | | ||||||||||| ||||| |||||| | || || ||| | | | Sbjct 1001 GGAAAAATGGCTGGGTATTTACGAATGTACTGGGCCAAAAAGTTTCTGGAGTGGTCAAAG 1060 Query 238685 ATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGG 238744 | | | || | || | || || || |||| |||||||||| |||| | ||||| Sbjct 1061 AACCCTGAACAAGCCTATCGGA-ATTGTCTTTACCTGAACGATAGATACAGTTTGGACGG 1119 Query 238745 TACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGC 238804 || ||||||||| ||| |||||||||||||| || | ||| | || || | | Sbjct 1120 TAACACCCCTAACGGAATCGTTGGTTGTATGTGGTCCATGTATGGGCTGCATGACCGTCC 1179 Query 238805 ATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAA 238846 ||| ||| || ||||| ||||| | | ||||||||||| Sbjct 1180 CTGGGGTGAAAGGCCTATTTTTGGCTATATCAGATACATGAA 1221 >seq15988 Length=1264 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTA-G 238684 || |||||| | | | ||||||||||| ||||| |||||| | || || ||| | | | Sbjct 264 GGAAAAATGGCTGGGTATTTACGAATGTACTGGGCCAAAAAGTTTCTGGAGTGGTCAAAG 205 Query 238685 ATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGG 238744 | | | || | || | || || || |||| ||||||||||||||| | ||||| Sbjct 204 AACCCTGAACAAGCCTATCGGA-ATTGTCTTTACCTGAACGATAAATACAGTTTGGACGG 146 Query 238745 TACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGC 238804 || ||||||||| |||||| ||||||||||| || | ||| | || || | | Sbjct 145 TAACACCCCTAACGGAATCGTAGGCTGTATGTGGTCCATGTATGGGCTGCATGACCGTCC 86 Query 238805 ATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAA 238846 ||| ||| || ||||| || || | | ||||||||||| Sbjct 85 CTGGGGTGAAAGGCCTATTTTCGGCTATATCAGATACATGAA 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150352255965112