Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq43997 158 1e-33 seq43996 152 5e-32 seq33280 116 3e-21 >seq43997 Length=5328 Score = 158 bits (174), Expect = 1e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || |||||||| || |||| |||||||| ||||| || || | Sbjct 5055 AAAAATTTGCATACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAAT 5114 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || |||||||||| ||| | |||||| ||||| || || ||||||| | ||||| Sbjct 5115 ATTGTAATCGCTCAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTG 5174 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| ||||||||||| || || || | ||| |||| || ||| | | ||||| Sbjct 5175 CTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTC 5234 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||| || || ||||| |||||||||||||| ||||| |||||||| Sbjct 5235 AGATGACTCAACATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Query 95008 GC 95009 || Sbjct 5295 GC 5296 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| || |||| ||||| |||| || ||||||||||| | |||||||| ||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| ||||| || || ||||||| | ||||||||||| |||||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | ||| |||| || ||| ||| ||||||| || || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || |||||||||||||||||||| ||||| || ||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||||| || ||||| || ||||| ||||| || || | |||||| ||||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||||| ||||| ||| | || || ||||| || ||||| |||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || || || | |||||| | || ||| | | || |||| || ||| Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || || ||||| ||||| || ||||||||||| |||||||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATGC 4840 >seq43996 Length=5100 Score = 152 bits (168), Expect = 5e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| || |||| ||||| |||| || ||||||||||| | |||||||| ||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| ||||| || || ||||||| | ||||||||||| |||||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | ||| |||| || ||| ||| ||||||| || || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || || |||||||||||||||||||| ||||| |||||||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCATGC 5068 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||||| || ||||| || ||||| ||||| || || | |||||| ||||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||||| ||||| ||| | || || ||||| || ||||| |||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || || || | |||||| | || ||| | | || |||| || ||| Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || || ||||| ||||| || ||||||||||| |||||||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATGC 4840 >seq33280 Length=5083 Score = 116 bits (128), Expect = 3e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAG 94814 ||||| ||| |||| ||| || || ||||||||||| || | |||| || | ||||| Sbjct 154 TAACGTTTTAACAAAAATTTGCATCCCACCTCTCAATCG-AAGAACAAGATGTAGAGTAG 212 Query 94815 ATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 | |||||||| | ||||| ||||| | || | ||| || | || || || ||| Sbjct 213 ACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCTTCTAATTGCTTACCAGCAA 272 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 | || | ||| ||||| ||||||||||||||||| ||||| | |||||| | || || Sbjct 273 AAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGATTTAACAT 332 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | | |||||| | || || |||| || || || || ||||| | ||| |||| Sbjct 333 TCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCA 392 Query 94995 CAAAGATCTGCAT 95007 |||| || ||||| Sbjct 393 CAAATATTTGCAT 405 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 94831 ATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||||| |||| || | |||||| ||||||||||| | || || | ||| ||||| Sbjct 1 ATAATCACTCAAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTG 60 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| |||||||| || || ||||| | |||||||| || ||| | | ||||||| Sbjct 61 ATCAGGAGGAATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGA 120 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||||| |||||||||||||| || | ||||| ||||| || ||||| Sbjct 121 TGATTCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447893823473040