Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq43997 122 8e-23 seq43996 122 8e-23 seq33280 100 3e-16 seq50184 84.2 2e-11 >seq43997 Length=5328 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| ||| | || ||| | || | || || Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| || ||| || || || || || ||||| |||||| Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCAA 4719 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| |||||| | || |||| |||| | |||||||||||| Sbjct 4718 CAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAAC 4659 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| |||||||| ||| | ||| ||||||||||| | || ||||| Sbjct 4658 ATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 >seq43996 Length=5100 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| ||| | || ||| | || | || || Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| || ||| || || || || || ||||| |||||| Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCAA 4719 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| |||||| | || |||| |||| | |||||||||||| Sbjct 4718 CAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAAC 4659 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| |||||||| ||| | ||| ||||||||||| | || ||||| Sbjct 4658 ATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 >seq33280 Length=5083 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || || ||||| || | || || | || | || | Sbjct 406 AATGCAAATATTTGTGAAGACTTTGACTGGTAAGACTATTACTCTTGATGTTGAGAGCAG 347 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | || ||| || ||| ||||| ||||| || ||||| || || Sbjct 346 TGACACGATTGAGAATGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 287 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || ||||| |||| | || || ||| | ||||||| || | | | ||||||||||| Sbjct 286 GCAGAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGGAGGACCTTAAGCGACTATAA 227 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || |||||| | ||||| || || || | ||||| || Sbjct 226 TATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGATTGAGAGGTGG 179 >seq50184 Length=1264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 71739 TACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGC-TC 71797 |||| |||||||||||||||||| |||| |||||| | | | || || || || || Sbjct 1020 TACGAATGTACTGGGCCAAAAAGTTTCTGGAGTGGTCAAAGAACCCTGAACAAGCCTATC 1079 Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857 | | ||| | |||| || ||||||||||||||| | |||||| | |||||||| Sbjct 1080 G-GAATTGTCTTTACCTGAACGATAGATACAGTTTGGACGGTAACACCCCTAACGGAATC 1138 Query 71858 GTCGGTTGCATGTGG 71872 || ||||| |||||| Sbjct 1139 GTTGGTTGTATGTGG 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478238101682080