Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq33280 105 6e-18 seq43997 98.7 8e-16 seq43996 95.1 1e-14 >seq33280 Length=5083 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || | || || || || ||||| | || ||| ||| Sbjct 406 AATGCAAATATTTGTGAAGACTTTGACTGGTAAGACTATTACTCTTGATGTTGAGAGCAG 347 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || ||| |||||| || || ||||| | || || || Sbjct 346 TGACACGATTGAGAATGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 287 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||||| ||| || || ||||||||||||| | ||| | ||| ||||| Sbjct 286 GCAGAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGGAGGACCTTAAGCGACTATAA 227 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| ||||||||| ||||| | || | ||||| |||| || Sbjct 226 TATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGATTGAGAGGTGG 179 >seq43997 Length=5328 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || |||||||| || || | || || || Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || ||| ||| ||| ||||| || ||| | || ||||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| ||||| | ||||||||| || | || |||| | |||| || |||||||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || || || | ||| |||| || | || |||| || Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGG 4840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| ||||| || ||||| || ||| | || ||||| Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| |||||| ||||| || || | || ||||| Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCAA 4719 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | || | || || |||||||| || |||| | ||| | ||| |||||| Sbjct 4718 CAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAAC 4659 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| || ||| ||||| |||| |||||||| | ||||| Sbjct 4658 ATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || || ||||| || || | || ||||| Sbjct 5294 ATGCAGATATTTGTTAAAACTCTTACTGGGAAAACTATAACTCTTGATGTTGAGTCATCT 5235 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| ||| ||| ||||| || || | || ||||||| Sbjct 5234 GACACAATTGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 5175 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| ||||| | ||| ||||| || | || |||| | ||| || |||||| || Sbjct 5174 CAAAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGAACTTTGAGCGATTACAAT 5115 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| || ||| | ||| |||| || ||||| | || || Sbjct 5114 ATTCAGAAAGAATCAACTTTGCATCTGGTATTACGATTGAGGGGTGG 5068 >seq43996 Length=5100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| ||||| || ||||| || ||| | || ||||| Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| |||||| ||||| || || | || ||||| Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCAA 4719 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | || | || || |||||||| || |||| | ||| | ||| |||||| Sbjct 4718 CAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAAC 4659 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| || ||| ||||| |||| |||||||| | ||||| Sbjct 4658 ATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || |||||||| || || | || || || Sbjct 5066 ATGCAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || ||| ||| ||| ||||| || ||| | || ||||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| ||||| | ||||||||| || | || |||| | |||| || |||||||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || || || | ||| |||| || | || |||| || Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGG 4840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424976390333680