Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq43996 93.3 4e-14 seq43997 91.5 1e-13 seq33280 84.2 2e-11 >seq43996 Length=5100 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | |||||||| || ||||| | ||| || |||||||| || || ||||| || Sbjct 4839 GCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACT 4898 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| | ||||| ||||||||||| || |||| | | ||||| || ||||| Sbjct 4899 CAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGG 4958 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || || || || || ||| | | || || | | | || | || || | || || | Sbjct 4959 AATGCCCTCCTTATC-CTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAA 5017 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||||| || || |||||||| || || ||||||||| Sbjct 5018 CATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCATG 5067 >seq43997 Length=5328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | |||||||| || ||||| | ||| || |||||||| || || ||||| || Sbjct 4839 GCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACT 4898 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| | ||||| ||||||||||| || |||| | | ||||| || ||||| Sbjct 4899 CAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGG 4958 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || || || || || ||| | | || || | | | || | || || | || || | Sbjct 4959 AATGCCCTCCTTATC-CTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAA 5017 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || |||||||| || ||||| ||||| Sbjct 5018 CATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq33280 Length=5083 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| || || || | ||||| || |||||||||||||| || || ||||| Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTT 238 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | | || |||| ||||| || || | || | | ||||||||| ||||| Sbjct 239 AAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 298 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| | || | | | ||| | || || || ||| | Sbjct 299 ATACCTTCCTTGTC-TTGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAAC 357 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| || | ||| || || || || ||||| Sbjct 358 ATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCAT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471594396053760