Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq33280 98.7 7e-16 seq43996 96.9 2e-15 seq38245 84.2 1e-11 seq26324 84.2 1e-11 seq26323 84.2 1e-11 seq26322 84.2 1e-11 seq26321 84.2 1e-11 >seq33280 Length=5083 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| || | || | ||| ||||| ||||||||||||||| || || Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTT 238 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | | || |||||||| || || ||||| || || | || || || | || Sbjct 239 AAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 298 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| |||||| || ||||||| | || || | || ||||| Sbjct 299 ATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACA 358 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | |||||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 359 TCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCAT 405 >seq43996 Length=5100 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| ||||||| |||||||| || ||| |||||||| ||||| |||||| | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | | | || || | || || || ||||| || || | ||| ||||| | || Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || || ||| ||| ||| || || || | || || || |||||| Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || |||||||| || || | ||||| || |||||||||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCATG 5067 >seq38245 Length=616 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/96 (79%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||||||| ||| ||||||||| ||||||| | ||||| || || | |||| Sbjct 404 TAAGCCCGTTCTGTTGACTGTGGTTTTGCTAGATGGAAGATAAGGACAGTGGATACCTCG 345 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| |||||||| |||||||| |||||||||| Sbjct 344 TTGATCAATTCATGCGGGTCACTAAATAGATGACGA 309 >seq26324 Length=1041 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/96 (79%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 ||||||| ||| ||| ||||||||||||||||| || |||||| | | |||| Sbjct 513 TAAGCCCTTTCTGTTGACTGTGGTTTCGCTAGATGAAAGGTAGGGGCAGTGGATACCTCG 454 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| ||||| || ||||||||||||||||||| Sbjct 453 TTGATCCATTCATTCGTGTCACTAATTAGATGACGA 418 >seq26323 Length=1017 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/96 (79%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 ||||||| ||| ||| ||||||||||||||||| || |||||| | | |||| Sbjct 447 TAAGCCCTTTCTGTTGACTGTGGTTTCGCTAGATGAAAGGTAGGGGCAGTGGATACCTCG 506 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| ||||| || ||||||||||||||||||| Sbjct 507 TTGATCCATTCATTCGTGTCACTAATTAGATGACGA 542 >seq26322 Length=1025 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/96 (79%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 ||||||| ||| ||| ||||||||||||||||| || |||||| | | |||| Sbjct 447 TAAGCCCTTTCTGTTGACTGTGGTTTCGCTAGATGAAAGGTAGGGGCAGTGGATACCTCG 506 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| ||||| || ||||||||||||||||||| Sbjct 507 TTGATCCATTCATTCGTGTCACTAATTAGATGACGA 542 >seq26321 Length=1016 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/96 (79%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 ||||||| ||| ||| ||||||||||||||||| || |||||| | | |||| Sbjct 447 TAAGCCCTTTCTGTTGACTGTGGTTTCGCTAGATGAAAGGTAGGGGCAGTGGATACCTCG 506 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| ||||| || ||||||||||||||||||| Sbjct 507 TTGATCCATTCATTCGTGTCACTAATTAGATGACGA 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334657717067534