Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq33280 125 6e-24 seq43997 107 2e-18 seq43996 104 2e-17 >seq33280 Length=5083 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||||||||| ||||| | || || | || || ||| Sbjct 406 AATGCAAATATTTGTGAAGACTTTGACTGGTAAGACTATTACTCTTGATGTTGAGAGCAG 347 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || || | |||| ||| ||||| ||||| ||||| || || Sbjct 346 TGACACGATTGAG--AATGTTAAATCTAAAATTCAA-GACAAGGAAGGTATTCCTCCAGA 290 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | |||||||||| || || ||||||||||||| | || | |||| || Sbjct 289 CCAGCAGAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGGAGGACCTTAAGCGACTA 230 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || || || |||||| | || || Sbjct 229 TAATATTCAAAAGGAGTCTACTCTACATCTTGTTCT 194 >seq43997 Length=5328 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || ||| | || || ||| | || || | || || ||||| ||| Sbjct 5294 ATGCAGATATTTGTTAAAACTCTTACTGGGAAAACTATAACTCTTGATGTTGAGTCATCT 5235 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | | || |||| | ||| || || || || ||||| ||||| || Sbjct 5234 GACACAATTGAAAACGTTAAATCAAAGATTCAG-GATAAGGAGGGTATTCCTCCTGATCA 5176 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| ||||| ||||| || | || |||| | ||| || |||||||||| Sbjct 5175 GCAAAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGAACTTTGAGCGATTACAA 5116 Query 25178 TATTCAAAAAGAATCCAC 25195 |||||| |||||||| || Sbjct 5115 TATTCAGAAAGAATCAAC 5098 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | || || ||| | || || | || || ||||| ||| Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | | || | |||| ||| || || || || ||||| || || || Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAG-GATAAGGAGGGTATTCCTCCGGATCA 4720 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || ||||| |||||||| || |||| | || | |||| || || Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAA 4660 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 ||||| ||||||||||| ||||||| || || || | || ||||| ||||| Sbjct 4659 CATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGGGTTTTATT 4604 >seq43996 Length=5100 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | || || ||| | || || | || || ||||| ||| Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | | || | |||| ||| || || || || ||||| || || || Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAG-GATAAGGAGGGTATTCCTCCGGATCA 4720 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || ||||| |||||||| || |||| | || | |||| || || Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAA 4660 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 ||||| ||||||||||| ||||||| || || || | || ||||| ||||| Sbjct 4659 CATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGGGTTTTATT 4604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432953490046910