Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq43997 89.7 4e-13 seq43996 84.2 2e-11 >seq43997 Length=5328 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || ||||| || || | || ||| | Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| ||| ||| || || || ||| |||| ||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||| | ||||||||| || | || ||| | ||| || ||||||||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||||||| ||||| || || ||||| || ||||| | | ||||||| Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGGCA 4838 >seq43996 Length=5100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 111262 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111321 || ||| ||| ||| || || || ||| |||| ||||| ||||||||||| | | Sbjct 4991 GTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAGCAAAGGCTTATCTTT 4932 Query 111322 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111381 |||||||| || | || ||| | ||| || ||||||||||||||||| ||||| Sbjct 4931 GCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAATATACAAAAGGAATCC 4872 Query 111382 ACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || ||||| || ||||| | | ||||||| Sbjct 4871 ACCCTGCATTTGGTTCTGCGTTTAAGAGGTGGCA 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422674381598800