Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq43997 147 4e-30 seq43996 147 4e-30 seq33280 129 1e-24 >seq43997 Length=5328 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| |||| ||||| ||||| || |||||||| ||| | ||| || ||||| || Sbjct 4630 ACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCCTCC 4689 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || |||||||||||||| | ||| ||||| || || ||||| || ||||| || ||| Sbjct 4690 AATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATCCTGA 4749 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || ||| ||| || || || | || || || |||| ||| || ||||| Sbjct 4750 ATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTTTTC 4809 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || ||||||||||| Sbjct 4810 CCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 113 bits (124), Expect = 8e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || ||||||| || | || || ||||| || || || |||||| | || || ||| Sbjct 5080 CGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTCTTCCA 5139 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || | |||||| || || || || || ||||| || || || ||||| || ||||| Sbjct 5140 TCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCCTTA 5199 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||||| || ||| || || ||||| | ||| || || || | || || Sbjct 5200 TCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTTATA 5259 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || ||||||||||| Sbjct 5260 GTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 >seq43996 Length=5100 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| |||| ||||| ||||| || |||||||| ||| | ||| || ||||| || Sbjct 4630 ACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCCTCC 4689 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || |||||||||||||| | ||| ||||| || || ||||| || ||||| || ||| Sbjct 4690 AATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATCCTGA 4749 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || ||| ||| || || || | || || || |||| ||| || ||||| Sbjct 4750 ATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTTTTC 4809 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || ||||||||||| Sbjct 4810 CCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| ||||| || || ||||| || ||||| || |||||||| | || || ||| Sbjct 4852 CGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCA 4911 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || | |||||| || || || || || ||||| || || || |||||||| ||||| Sbjct 4912 TCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTA 4971 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||||| || ||| ||||| ||||| | |||||| || || | || || Sbjct 4972 TCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATA 5031 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || || || ||||||||||| Sbjct 5032 GTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 >seq33280 Length=5083 Score = 129 bits (142), Expect = 1e-24 Identities = 157/210 (75%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| ||||| || ||||| ||||| || ||||| ||| | |||||||||||||||| Sbjct 198 CAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCTTCTA 257 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || || || || ||||| || ||||| || ||||| |||||||||||||||| Sbjct 258 ATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAA 317 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTT 68432 | || | || || ||| || ||||| ||| | || || || | || || || || Sbjct 318 TTTTAGATTTAACATTCTCAATCGTGTC-ACTGCTCTCAACATCAAGAGTAATAGTCTTA 376 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||||| || ||||| |||||| Sbjct 377 CCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || |||||||| || | ||| || || ||||| || ||||| || || || || ||||| Sbjct 14 GTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGAATT 73 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| ||||| |||| || ||| || |||||||| | |||||| || || Sbjct 74 CCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACGTCA 133 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||||| || | || || || || || ||||| Sbjct 134 AGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920805450864080