Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq43997 105 5e-18 seq33280 86.0 4e-12 >seq43997 Length=5328 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| ||||||| | || || ||||| || || | || || | | Sbjct 5294 ATGCAGATATTTGTTAAAACTCTTACTGGGAAAACTATAACTCTTGATGTTGAGTCATCT 5235 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | |||| ||| ||| ||||| |||||| | ||| | || Sbjct 5234 GACACAATTGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 5175 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||||||||| || || || ||| || |||| || |||||||||| Sbjct 5174 CAAAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGAACTTTGAGCGATTACAAT 5115 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 |||||||| ||||| ||| | ||| |||||||||| || Sbjct 5114 ATTCAGAAAGAATCAACTTTGCATCTGGTATTACGATT 5077 >seq33280 Length=5083 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCG 21891 ||||||||||||| | || || || || || || || ||||| | || || ||| | Sbjct 406 AATGCAAATATTTGTGAAGACTTTGACTGGTAAGACTATTACTCTTGATGTTGAGAGCAG 347 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 || ||| | | || |||| |||||| || || || ||| | ||| | ||| Sbjct 346 T-GACACGATTGAGAATGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACC 288 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 | ||||||||||| |||||||| || ||| |||||||| | || | ||| || | Sbjct 287 AGCAGAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGGAGGACCTTAAGCGACTATA 228 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| ||||| |||||||| ||| | || | || || |||| || Sbjct 227 ATATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGATTGAGAGGTGG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357815285493556