Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq43997 116 3e-21 seq43996 116 3e-21 >seq43997 Length=5328 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||| || ||||||| || |||||||| |||||||| || ||||| | || | Sbjct 4623 TCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCC 4682 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| || | |||||| || ||| | || | | |||||| ||||||||||| || || || Sbjct 4683 ATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTT 4742 Query 114287 GTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 || ||| ||| |||||| | | |||| || || | || || ||||||| ||| | Sbjct 4743 ATCCTGAAT-TTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTA 4801 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| || || || ||||| ||||| ||||||||| Sbjct 4802 TTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | || || || | ||| | || |||||||| ||||| ||||||||| Sbjct 5065 ATACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCG 5124 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| | ||| || || || || ||||| |||| || | || || || ||| Sbjct 5125 CTCAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGA 5184 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || ||||||| ||| | | ||||| ||||| | || || Sbjct 5185 GGAATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCA 5244 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| || || |||||||| ||||| ||||||||| Sbjct 5245 ACATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCATG 5295 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| ||||| | || ||||| ||||| || || ||||| |||| || | ||| Sbjct 4854 CAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATC 4913 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || |||| || | || || || ||||||||||| || || || Sbjct 4914 CTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATC 4973 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | ||| | ||||| | ||||| || || | || | || Sbjct 4974 CTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGT 5033 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || |||||||| |||||||| ||||| Sbjct 5034 TTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq43996 Length=5100 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||| || ||||||| || |||||||| |||||||| || ||||| | || | Sbjct 4623 TCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCC 4682 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| || | |||||| || ||| | || | | |||||| ||||||||||| || || || Sbjct 4683 ATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTT 4742 Query 114287 GTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 || ||| ||| |||||| | | |||| || || | || || ||||||| ||| | Sbjct 4743 ATCCTGAAT-TTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTA 4801 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| || || || ||||| ||||| ||||||||| Sbjct 4802 TTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| ||||| | || ||||| ||||| || || ||||| |||| || | ||| Sbjct 4854 CAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATC 4913 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || |||| || | || || || ||||||||||| || || || Sbjct 4914 CTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATC 4973 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | ||| | ||||| | ||||| || || | || | || Sbjct 4974 CTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGT 5033 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| || || |||||||| ||||| ||||||||| Sbjct 5034 TTTTCCAGTAAGAGTTTTAACAAATATCTGCATG 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419771292805368