Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq43997 91.5 1e-13 seq43996 91.5 1e-13 >seq43997 Length=5328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||||| |||| | ||| |||| ||| | ||| || ||||||||||| Sbjct 4603 CAATAAAACCCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTA 4662 Query 33952 TAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGA 34011 || || ||| || | || |||||||| || ||||| ||||||| | ||| ||| Sbjct 4663 TAGTCGCTTAATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGA 4722 Query 34012 TCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGT 34070 ||| || | | ||| || ||| | | |||| | || | | |||| | |||||| Sbjct 4723 TCCGGAGGAATACCCTCCTTATCC-TGAATTTTCGTTTTAACGTTCTCAATCGTATCAGA 4781 Query 34071 AGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || || | ||||||||||| || || || ||||||||||| || ||||| Sbjct 4782 AGACTCAACGTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43996 Length=5100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||||| |||| | ||| |||| ||| | ||| || ||||||||||| Sbjct 4603 CAATAAAACCCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTA 4662 Query 33952 TAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGA 34011 || || ||| || | || |||||||| || ||||| ||||||| | ||| ||| Sbjct 4663 TAGTCGCTTAATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGA 4722 Query 34012 TCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGT 34070 ||| || | | ||| || ||| | | |||| | || | | |||| | |||||| Sbjct 4723 TCCGGAGGAATACCCTCCTTATCC-TGAATTTTCGTTTTAACGTTCTCAATCGTATCAGA 4781 Query 34071 AGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || || | ||||||||||| || || || ||||||||||| || ||||| Sbjct 4782 AGACTCAACGTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396719233113028