Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq43997 107 2e-18 seq43996 102 9e-17 seq33280 91.5 2e-13 >seq43997 Length=5328 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||||| |||||||||| ||| |||||||| ||||| |||||| | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || | | || || |||||||| || || || || || | ||||| || | || Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| | |||| || | || | | | ||||| ||||| || Sbjct 4960 ATGCCCTCCTTATCC-TGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAAC 5018 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| | || || ||||| || || || || || ||||| |||||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || || || |||| |||||| || || || |||||||||||||| Sbjct 5067 ACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCT 5126 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| | | || || |||||||| ||||| || || || | ||||| || | || Sbjct 5127 CAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGG 5186 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||| ||| ||| | |||| || | || | | | ||||| || || | Sbjct 5187 AATACCCTCCTTATCC-TGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAA 5245 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | || || ||||| || || || || || ||||| || ||||| Sbjct 5246 CATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 >seq43996 Length=5100 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||||| |||||||||| ||| |||||||| ||||| |||||| | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || | | || || |||||||| || || || || || | ||||| || | || Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| | |||| || | || | | | ||||| ||||| || Sbjct 4960 ATGCCCTCCTTATCC-TGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAAC 5018 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| | || || ||||| || || || || || ||||| || ||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 >seq33280 Length=5083 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 |||||| || || | | | || || ||||| || |||||||| || |||| |||||| Sbjct 2 TAATCACTCAAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGA 61 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCT 42151 || | || | | |||||||||| ||| ||||||||| ||| || | |||| Sbjct 62 TCAGGAGGAATTCCCTCCTTGTCC-TGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGA 120 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | ||||||||||| || |||| ||| || ||||| |||||||| Sbjct 121 TGATTCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||||||||| || || | |||| | | || |||| ||||||||||| || Sbjct 214 CTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAA 273 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || |||| ||||||||| | || | | ||||||| | ||| |||| | ||| | Sbjct 274 AATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGT-CTTGAATTTTAGATTTAACAT 332 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | |||||| || || ||||| | || || || || || || | ||||| | Sbjct 333 TCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCA 392 Query 42196 CAAAGATTTGCATT 42209 |||| ||||||||| Sbjct 393 CAAATATTTGCATT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542731282593760