Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq33280 102 8e-17 seq61479 87.8 2e-12 seq8514 87.8 2e-12 >seq33280 Length=5083 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | ||| | ||||| | |||||||||||||| || |||||||| Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTT 238 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | || || | ||| ||||| | | | || || | ||| ||||| ||||| Sbjct 239 AAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 298 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||| | ||||| | || | ||||| | ||| || Sbjct 299 ATACCTTCCTTGTC-TTGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAAC 357 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||||| ||| || ||||| || ||||| Sbjct 358 ATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCAT 405 >seq61479 Length=12598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 52605 ATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAG 52664 ||| |||| || ||||| | | | |||||||| ||||| | | || || || || | Sbjct 6881 ATGATCAAAGATGCGGTTGATGTTGAAAAGGAATTTTTCAGTGAAGCTCTTCCTGTTAAA 6940 Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724 || | || ||||| | | || ||||| || ||||| || ||||| || ||| | || Sbjct 6941 CTTATTGGAATGAATGTGAAGGATATGTGTGATTACATTGAATTTGTTGCTGATAGGCTC 7000 Query 52725 TTGGTGCAGCTCGGG--CAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGA 52782 || | | || ||| |||| ||| | ||| | || || ||||| |||||| Sbjct 7001 ATGATAGAACTTGGGTACAGCAAAATCTTTGGAACCGTT--AACCCTTTTGATTTTATGG 7058 Query 52783 ACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 | ||||| || ||||| || |||||||||||||| || ||||| || Sbjct 7059 AAAACATCTCTCTTGAAGGGAAGACCAACTTTTTTGAAAAGCGTGT 7104 >seq8514 Length=8580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 52605 ATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAG 52664 ||| |||| || ||||| | | | |||||||| ||||| | | || || || || | Sbjct 5934 ATGATCAAAGATGCGGTTGATGTTGAAAAGGAATTTTTCAGTGAAGCTCTTCCTGTTAAA 5875 Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724 || | || ||||| | | || ||||| || ||||| || ||||| || ||| | || Sbjct 5874 CTTATTGGAATGAATGTGAAGGATATGTGTGATTACATTGAATTTGTTGCTGATAGGCTC 5815 Query 52725 TTGGTGCAGCTCGGG--CAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGA 52782 || | | || ||| |||| ||| | ||| | || || ||||| |||||| Sbjct 5814 ATGATAGAACTTGGGTACAGCAAAATCTTTGGAACCGTT--AACCCTTTTGATTTTATGG 5757 Query 52783 ACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 | ||||| || ||||| || |||||||||||||| || ||||| || Sbjct 5756 AAAACATCTCTCTTGAAGGGAAGACCAACTTTTTTGAAAAGCGTGT 5711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495822500602080