Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq43997 125 6e-24 seq43996 122 8e-23 seq33280 105 6e-18 >seq43997 Length=5328 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || ||||||||||| ||||||||||| || | |||| | ||| || | || Sbjct 4863 ATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATCCTCGAGCTG 4922 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | || | | |||||| || || |||||||| || ||||| ||||| || Sbjct 4923 CTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTT 4982 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | ||| | ||| | ||||| || || || || || ||||| | ||||| || || Sbjct 4983 TGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGT 5042 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| |||||||||||||| Sbjct 5043 AAGAGTTTTAACAAAAATTTGCAT 5066 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || | ||| | || ||||| || || || ||||| ||||| | ||| | | Sbjct 4624 CTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCA 4683 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || ||| ||||||||| || || ||||| ||||| || || ||| Sbjct 4684 TCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTA 4743 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || |||| |||| |||| | || | || | || || |||||||| || || || || | Sbjct 4744 TCCTGAA-TTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTAT 4802 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| ||||| || ||||| Sbjct 4803 TGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43996 Length=5100 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || | ||| | || ||||| || || || ||||| ||||| | ||| | | Sbjct 4624 CTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCA 4683 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || ||| ||||||||| || || ||||| ||||| || || ||| Sbjct 4684 TCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTA 4743 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || |||| |||| |||| | || | || | || || |||||||| || || || || | Sbjct 4744 TCCTGAA-TTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTAT 4802 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| ||||| || ||||| Sbjct 4803 TGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || ||||||||||| ||||||||||| || | |||| | ||| || | || Sbjct 4863 ATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATCCTCGAGCTG 4922 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | || | | |||||| || || |||||||| || ||||| ||||| || Sbjct 4923 CTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTT 4982 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | ||| | ||| | ||||| || || || || || ||||| | ||||| || || Sbjct 4983 TGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGT 5042 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| || ||||| Sbjct 5043 AAGAGTTTTAACAAATATCTGCAT 5066 >seq33280 Length=5083 Score = 105 bits (116), Expect = 6e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223 |||||| || | |||| | ||| || | |||||||| ||| | || | || ||||| Sbjct 1 ATAATCACTCAAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTG 60 Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283 || || ||||| || || || || ||||||||| ||| | ||| | |||||| || Sbjct 61 ATCAGGAGGAATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGA 120 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || ||||| | ||||| ||||||| ||||| ||||||||||||||| Sbjct 121 TGATTCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCATC 178 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || |||||||| |||||||| ||||| | ||| | ||| || Sbjct 197 ACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCTTCT 256 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | || | || |||||||| || ||||| ||||| || |||||| Sbjct 257 AATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 316 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | || | ||||| ||| || || ||||||| || || Sbjct 317 ATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTCTTA 376 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| || ||||| |||||||| Sbjct 377 CCAGTCAAAGTCTTCACAAATATTTGCAT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451602533063440