Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq43997 118 2e-21 seq43996 109 1e-18 seq33280 100 7e-16 >seq43997 Length=5328 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||| | || || ||| ||| || |||||||| || |||||| Sbjct 4864 TGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATCCTCGAGCTGC 4923 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| || | ||||| || ||| ||| || || |||||||||||| Sbjct 4924 TTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTTT 4983 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||| ||||| ||||| | || ||| ||||| | || || || || || || Sbjct 4984 GATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGTA 5043 Query 199607 AGAGTTTTCACAAAAATTTG 199626 |||||||| ||||||||||| Sbjct 5044 AGAGTTTTAACAAAAATTTG 5063 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || | ||| || || || || | ||||| || |||||| |||||||| || Sbjct 5086 ACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTCTTCCATCCTCG 5145 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || ||||| || | ||||| || ||| ||| || || |||||| Sbjct 5146 AGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCCTTATCCTGA 5205 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| || ||| ||| | ||||| | || || ||||| | || || || || Sbjct 5206 ATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTTATAGTTTTC 5265 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| ||||| || || Sbjct 5266 CCAGTAAGAGTTTTAACAAATATCTG 5291 >seq43996 Length=5100 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||| | || || ||| ||| || |||||||| || |||||| Sbjct 4864 TGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATCCTCGAGCTGC 4923 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| || | ||||| || ||| ||| || || |||||||||||| Sbjct 4924 TTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTTT 4983 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||| ||||| ||||| | || ||| ||||| | || || || || || || Sbjct 4984 GATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGTA 5043 Query 199607 AGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || Sbjct 5044 AGAGTTTTAACAAATATCTG 5063 >seq33280 Length=5083 Score = 100 bits (110), Expect = 7e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 199454 TAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGG 199513 || ||| ||| || || ||||| || ||||| ||||| ||||| || || | |||||| Sbjct 2 TAATCACTCAAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGA 61 Query 199514 TCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTT 199573 || ||| |||||| || |||||||| ||| |||||| ||| | |||||| | | Sbjct 62 TCAGGAGGAATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGAT 121 Query 199574 GTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||| || || | ||||| || || || || | ||||| ||||||||||| Sbjct 122 GATTCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTG 174 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| ||||||||||| | || ||||| || ||||| |||||| Sbjct 194 AGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCT 253 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | ||||| || || || || || | ||||||||| ||| ||| ||||| || Sbjct 254 TCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCT 313 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || || || || | ||||| | | || ||||| | || || ||| Sbjct 314 TGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTC 373 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | ||| |||||||| ||||| Sbjct 374 TTACCAGTCAAAGTCTTCACAAATATTTG 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177850448781238