Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq43997 95.1 8e-15 seq43996 95.1 8e-15 >seq43997 Length=5328 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| | ||| |||||||| |||||| |||||| || || ||||| ||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| ||||||||||||||| | || || || | ||| ||||||| || Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCG-TCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || || || | | |||| |||| | || || | | || || | || || Sbjct 4732 ATACCCTCCTTATC-CTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAAC 4790 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || |||||||| || || | ||||| || || ||||||||| Sbjct 4791 GTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| |||||||| |||||||||| ||| ||| ||||||||||||||||| Sbjct 4839 GCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACT 4898 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | | |||| || | || || || |||| || | | |||||||| | || Sbjct 4899 CAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGG 4958 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || || || || ||| ||||| | | | |||||| | ||| || Sbjct 4959 AATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAAC 5018 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || ||||| || || | |||||| || || || ||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq43996 Length=5100 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| | ||| |||||||| |||||| |||||| || || ||||| ||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| ||||||||||||||| | || || || | ||| ||||||| || Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCG-TCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || || || | | |||| |||| | || || | | || || | || || Sbjct 4732 ATACCCTCCTTATC-CTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAAC 4790 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || |||||||| || || | ||||| || || ||||||||| Sbjct 4791 GTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| |||||||| |||||||||| ||| ||| ||||||||||||||||| Sbjct 4839 GCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACT 4898 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | | |||| || | || || || |||| || | | |||||||| | || Sbjct 4899 CAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGG 4958 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || || || || ||| ||||| | | | |||||| | ||| || Sbjct 4959 AATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAAC 5018 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || ||||| || || | |||||| || || ||||||||| Sbjct 5019 ATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCATG 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347069380829762