Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq43997 104 2e-17 seq43996 104 2e-17 seq33280 89.7 5e-13 >seq43997 Length=5328 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || ||||| || || | || || || | | Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| ||||| ||| || | || || ||||| ||||| | || || Sbjct 5006 GACACAATCGAAAACG-TTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCA 4948 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || |||| || | |||||||| ||||| || || | | ||| | | || || || Sbjct 4947 GCAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAA 4888 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||| | || ||||||||||| |||||||| ||||| ||| Sbjct 4887 TATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGGC 4839 >seq43996 Length=5100 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| || || || ||||| || || | || || || | | Sbjct 5066 ATGCAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| ||||| ||| || | || || ||||| ||||| | || || Sbjct 5006 GACACAATCGAAAACG-TTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCA 4948 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || |||| || | |||||||| ||||| || || | | ||| | | || || || Sbjct 4947 GCAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAA 4888 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||| | || ||||||||||| |||||||| ||||| ||| Sbjct 4887 TATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGGC 4839 >seq33280 Length=5083 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||| | || || ||||||||||| | ||||| || | | Sbjct 177 ATGCAAATTTTTGTTAAAACGTTAACCGGAAAAACCATCACTCTTGACGTTGAATCATCT 118 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | ||| |||||| | ||||| ||||||||||| | || || Sbjct 117 GACACCATTGAAAACG-TGAAAACAAAAATTCAGGACAAGGAGGGAATTCCTCCTGATCA 59 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| | || |||| ||| || |||||||| || || Sbjct 58 GCAGAGACTTATTTTCGCTGGAAAACAGCTTGAGGA 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499729434325760