Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq61479 89.7 6e-13 seq8514 89.7 6e-13 >seq61479 Length=12598 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| ||| ||| ||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 7114 ATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCCAT 7055 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC--ACCCCAACTTGTTTGAGGAGA 117102 ||| ||||| || || || |||||||| | || ||||| || | | | ||| Sbjct 7054 AAAATCAAAAGGGTT-AACG-GTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGC 6997 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTC-TCAGAGTTCATACCGATGAGATT 117161 | ||| | ||| | |||||||| || |||| | | ||| | ||||| || || || || Sbjct 6996 CTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAGTTT 6938 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTT 117212 | || || || || || || | || |||| |||||||| ||||| Sbjct 6937 AACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTT 6887 >seq8514 Length=8580 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| ||| ||| ||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 5701 ATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCCAT 5760 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC--ACCCCAACTTGTTTGAGGAGA 117102 ||| ||||| || || || |||||||| | || ||||| || | | | ||| Sbjct 5761 AAAATCAAAAGGGTT-AACG-GTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGC 5818 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTC-TCAGAGTTCATACCGATGAGATT 117161 | ||| | ||| | |||||||| || |||| | | ||| | ||||| || || || || Sbjct 5819 CTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATAAGTTT 5877 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTT 117212 | || || || || || || | || |||| |||||||| ||||| Sbjct 5878 AACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTT 5928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589457826269360