Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq33280 168 1e-36 seq43997 136 9e-27 seq43996 131 4e-25 >seq33280 Length=5083 Score = 168 bits (186), Expect = 1e-36 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || ||||| ||||| ||||||||||| || ||| | || ||||||||||| Sbjct 196 AACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCTTC 255 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||||| || || ||||||| || |||||||||||||| ||||| |||||||| Sbjct 256 TAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTG 315 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || |||||||| ||||| || || || ||||| |||| ||||| Sbjct 316 AATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTCTT 375 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| || || || | ||||||| Sbjct 376 ACCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 125 bits (138), Expect = 2e-23 Identities = 130/169 (77%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 194972 CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAG 195031 |||| ||||||||||| || ||||| || || ||||| ||||||| || || || |||| Sbjct 10 CAAG-GTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAG 68 Query 195032 GAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCA 195091 |||| || || ||||| ||||||||| || ||||| ||||||||||| || ||| | Sbjct 69 GAATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAA 128 Query 195092 CTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || | || ||||| || || ||||| || || | |||||| Sbjct 129 CGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 >seq43997 Length=5328 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || ||||| || ||||| ||||| ||||| |||| ||||| ||||| |||||||| Sbjct 4864 TGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAG-GTTCTTCCATCCTCGAGCTG 4922 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| | ||| || || ||||||||||| || || || ||||| || Sbjct 4923 CTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTT 4982 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || ||||| || || ||||| || ||| || ||||| || | || ||||| || Sbjct 4983 TGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGT 5042 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 5043 AAGAGTTTTAACAAAAATTTGCAT 5066 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || || || | ||| || ||||| ||||||||||||||| | |||||| ||||| Sbjct 5083 AATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTCTTCCATCC 5142 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||||||||| || || |||||||| | ||| || || |||||||| || || || || Sbjct 5143 TCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCCTTATCC 5202 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || ||||| ||||| ||||| || || || ||||| || | || Sbjct 5203 TGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTTATAGTT 5262 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | |||||| || || | ||||| Sbjct 5263 TTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||| || | || | |||||| ||||| ||||| || || ||| | ||||| || Sbjct 4623 TCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCC 4682 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| || | || || || ||||| || | || ||||| || |||||||| || || || Sbjct 4683 ATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTT 4742 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || |||||||| || ||||||||||| || || ||| || || || ||||| | Sbjct 4743 ATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTAT 4802 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || | ||||| || || | ||||| Sbjct 4803 TGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43996 Length=5100 Score = 131 bits (144), Expect = 4e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || ||||| || ||||| ||||| ||||| |||| ||||| ||||| |||||||| Sbjct 4864 TGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAG-GTTCTTCCATCCTCGAGCTG 4922 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| | ||| || || ||||||||||| || || || ||||| || Sbjct 4923 CTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTT 4982 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || ||||| || || ||||| || ||| || ||||| || | || ||||| || Sbjct 4983 TGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGT 5042 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | ||||| Sbjct 5043 AAGAGTTTTAACAAATATCTGCAT 5066 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||| || | || | |||||| ||||| ||||| || || ||| | ||||| || Sbjct 4623 TCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCC 4682 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| || | || || || ||||| || | || ||||| || |||||||| || || || Sbjct 4683 ATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTT 4742 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || |||||||| || ||||||||||| || || ||| || || || ||||| | Sbjct 4743 ATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTAT 4802 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || | ||||| || || | ||||| Sbjct 4803 TGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108473540967038