Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq43997 129 4e-25 seq43996 129 4e-25 >seq43997 Length=5328 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 ||||||||||| |||| ||||| || | ||| ||||||||||||||||||||| | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | ||| | |||| |||| ||||| ||||| ||||| | || || || || | || Sbjct 4672 AATG-TTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGG 4730 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | |||||||| || ||| ||| ||| ||| | |||| ||| | |||||| Sbjct 4731 AATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAAC 4790 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | |||||| ||||| || ||||| || |||||||| |||||||| Sbjct 4791 GTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 || |||||||| | || |||| || | || |||||||||||| || || || | Sbjct 5068 CCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTC 5127 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | ||| | |||| || ||||| || || ||||| || || | |||||| || | || Sbjct 5128 AAAG-TTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGG 5186 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | |||||||| || |||||| ||| ||| | | || | ||| | |||||| Sbjct 5187 AATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAAC 5246 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| | ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 5247 ATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 >seq43996 Length=5100 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 ||||||||||| |||| ||||| || | ||| ||||||||||||||||||||| | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | ||| | |||| |||| ||||| ||||| ||||| | || || || || | || Sbjct 4672 AATG-TTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGG 4730 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | |||||||| || ||| ||| ||| ||| | |||| ||| | |||||| Sbjct 4731 AATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAAC 4790 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | |||||| ||||| || ||||| || |||||||| |||||||| Sbjct 4791 GTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324353030744592