Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq61479 131 2e-25 seq8514 131 2e-25 >seq61479 Length=12598 Score = 131 bits (144), Expect = 2e-25 Identities = 262/383 (68%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||| ||||||||||| ||| || |||| ||||| || ||||| ||||| Sbjct 7132 CATCACTCCTGGCTTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTC 7073 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || || || ||||||||||||||||| || ||| || | | || | || | Sbjct 7072 AAGAGAGATGTTTTCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCC 7013 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACAT-TAGTTCATAGT 37050 | ||| ||| |||||||| ||||||||||| ||||| | |||||| | |||| | | Sbjct 7012 AAGTTCTATCATGAGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-T 6954 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATC-TTGAAGAAATAGTTTTTCTATTATTACA 37109 | || ||||| ||||| || |||| || || |||| |||| ||||| | || Sbjct 6953 TCATTCCAATAAGTTTAACAGGAAGAGCTTCACTGAA-AAATTCCTTTTCAACATCAACC 6895 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAAC 37169 |||||||| | || | ||||| || ||| | || || | | || | | ||| Sbjct 6894 GCATCTTTGATCATTTCAACAACAATGCTTTCGGAAGGTTTATTTATCAACTTACTGAAC 6835 Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 | | ||| |||||||| ||| | |||||||| | |||||| || || ||| | | Sbjct 6834 ATAAGACAGGCAAAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGG 6775 Query 37230 GTTAATCCTGGCATTAAACCTCT 37252 || | ||||||||| | ||| || Sbjct 6774 GTAAGTCCTGGCATGAGACCACT 6752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| ||| | ||| || |||||| || ||| | || ||||| || ||||| Sbjct 3986 AATCCAGTTTAGGGCCCATTCAGCCTTTTTCTTGACAGAAGGAAGGGTTTCGATGGCTTT 3927 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || | ||| |||||| | ||| | || || |||||||| | ||||| ||||| Sbjct 3926 GAACAACCTATTTCGTTCTTCGATTTCTTTAATGTACGTATCAATCAACAAACTGTACAT 3867 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||||||| |||||||| | || || || || || || ||||| || ||||| Sbjct 3866 TTCAGAGTGGATATTTTCCACCGCAATTTGGAACCCGTAGAAACATCTTGCTTC 3813 >seq8514 Length=8580 Score = 131 bits (144), Expect = 2e-25 Identities = 262/383 (68%), Gaps = 4/383 (1%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||| ||||||||||| ||| || |||| ||||| || ||||| ||||| Sbjct 5683 CATCACTCCTGGCTTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTC 5742 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || || || ||||||||||||||||| || ||| || | | || | || | Sbjct 5743 AAGAGAGATGTTTTCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCC 5802 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACAT-TAGTTCATAGT 37050 | ||| ||| |||||||| ||||||||||| ||||| | |||||| | |||| | | Sbjct 5803 AAGTTCTATCATGAGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-T 5861 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATC-TTGAAGAAATAGTTTTTCTATTATTACA 37109 | || ||||| ||||| || |||| || || |||| |||| ||||| | || Sbjct 5862 TCATTCCAATAAGTTTAACAGGAAGAGCTTCACTGAA-AAATTCCTTTTCAACATCAACC 5920 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAAC 37169 |||||||| | || | ||||| || ||| | || || | | || | | ||| Sbjct 5921 GCATCTTTGATCATTTCAACAACAATGCTTTCGGAAGGTTTATTTATCAACTTACTGAAC 5980 Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 | | ||| |||||||| ||| | |||||||| | |||||| || || ||| | | Sbjct 5981 ATAAGACAGGCAAAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGG 6040 Query 37230 GTTAATCCTGGCATTAAACCTCT 37252 || | ||||||||| | ||| || Sbjct 6041 GTAAGTCCTGGCATGAGACCACT 6063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591791755580560