Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq43996 163 2e-35 seq43997 152 4e-32 seq33280 125 6e-24 >seq43996 Length=5100 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | ||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | ||||| || ||||| || | | || ||||| || ||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| ||||| ||| ||| || |||| | |||||||| | ||| || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | ||||| || || | |||||| ||||||||||||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCATG 5067 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || || | | || ||||| | || |||||||| || || || || ||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| |||||||| || || || |||||||| | ||||||||| || ||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| |||||||| ||| || | || | || ||||| | || || Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || | ||||| || || | ||||| ||||||||||||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 >seq43997 Length=5328 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | ||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | ||||| || ||||| || | | || ||||| || ||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| ||||| ||| ||| || |||| | |||||||| | ||| || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| || || | |||||| ||||| || ||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || || ||||| || | ||| | || |||||||| || |||||||||||| Sbjct 5068 CCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTC 5127 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||||| || ||||| || | | || ||||| || ||| Sbjct 5128 AAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGA 5187 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| ||||| ||| ||| || |||| | |||||||| | || || Sbjct 5188 ATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACA 5247 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | ||||| || || | |||||| ||||||||||||||| Sbjct 5248 TCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCATG 5295 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || || | | || ||||| | || |||||||| || || || || ||| Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| |||||||| || || || |||||||| | ||||||||| || ||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| |||||||| ||| || | || | || ||||| | || || Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || | ||||| || || | ||||| ||||||||||||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 >seq33280 Length=5083 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || || | ||| | ||| || ||||| || ||||| ||||| || ||| Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTT 238 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || |||| || ||||||||||| ||||| || | | ||| || || || ||| Sbjct 239 AAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 298 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| ||| ||| | || | |||||| | || || Sbjct 299 ATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACA 358 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || || ||||| || |||||||| ||||| Sbjct 359 TCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCAT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395935910696298