Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq54562 172 3e-38 seq39983 172 3e-38 seq34305 172 3e-38 seq31035 172 3e-38 seq31034 172 3e-38 >seq54562 Length=4898 Score = 172 bits (190), Expect = 3e-38 Identities = 326/480 (68%), Gaps = 0/480 (0%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| || | ||| |||||| ||| |||||| | | |||||||||||| | Sbjct 3635 ATTTGGGCACATTAAGGACCAATCCTCATCGGCTTCAACTCTTTTCATAAATAAATCAGA 3694 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||||| || ||||| || ||||| ||||| || ||||| ||||| ||| ||| | Sbjct 3695 AATCCACAAGGCGTAAAACAAGTCTCTAGCTCTTATCTCTTCATTTCCCACATTTTTTCT 3754 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||| ||||| || |||||||||| | |||||||| || | ||| |||||||| ||||| Sbjct 3755 TAGCTCTAAAAATGCAAAAATATCCGCATGCCATGGCTCAAGATAAATAGCAAAGCTACC 3814 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | | || |||||| ||||| ||||||| | | | ||| || || | |||| Sbjct 3815 TGGGCGCTTATTTCCACCCTGATCAACGTATCGCGAAACATTATTAAAGACCCTTAACAA 3874 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||||| | || | ||||| || || | ||| | || || | | | ||| Sbjct 3875 TGGAACAAGGCCGTTCGAAAAACCACAAGTACCCGCAATATACGAGCCAGAAGCCCGAAT 3934 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 || ||| ||| | || ||||| ||||| ||| || || ||||| || ||| Sbjct 3935 ATTATGAAGATGCAATCCAATTCCTCCAGCGTGTTTCGATATCATAGCACATTCCTTAAC 3994 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 || || || || || | ||||| ||| ||||||| | | || |||||| | || Sbjct 3995 AGTGTCAAATATGCCCTCAATGCTGTCATCTTTCATAGCAATCAAGAAACAACTTGCCAA 4054 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 ||| | || | ||||||||| | || || || |||||||||||||| ||||| Sbjct 4055 TTGTCCTTTAGGAAGACATGAATTAAACAGGGTGGGGGTTGCATGAGTATAATAACCTTC 4114 >seq39983 Length=4877 Score = 172 bits (190), Expect = 3e-38 Identities = 326/480 (68%), Gaps = 0/480 (0%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| || | ||| |||||| ||| |||||| | | |||||||||||| | Sbjct 3614 ATTTGGGCACATTAAGGACCAATCCTCATCGGCTTCAACTCTTTTCATAAATAAATCAGA 3673 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||||| || ||||| || ||||| ||||| || ||||| ||||| ||| ||| | Sbjct 3674 AATCCACAAGGCGTAAAACAAGTCTCTAGCTCTTATCTCTTCATTTCCCACATTTTTTCT 3733 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||| ||||| || |||||||||| | |||||||| || | ||| |||||||| ||||| Sbjct 3734 TAGCTCTAAAAATGCAAAAATATCCGCATGCCATGGCTCAAGATAAATAGCAAAGCTACC 3793 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | | || |||||| ||||| ||||||| | | | ||| || || | |||| Sbjct 3794 TGGGCGCTTATTTCCACCCTGATCAACGTATCGCGAAACATTATTAAAGACCCTTAACAA 3853 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||||| | || | ||||| || || | ||| | || || | | | ||| Sbjct 3854 TGGAACAAGGCCGTTCGAAAAACCACAAGTACCCGCAATATACGAGCCAGAAGCCCGAAT 3913 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 || ||| ||| | || ||||| ||||| ||| || || ||||| || ||| Sbjct 3914 ATTATGAAGATGCAATCCAATTCCTCCAGCGTGTTTCGATATCATAGCACATTCCTTAAC 3973 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 || || || || || | ||||| ||| ||||||| | | || |||||| | || Sbjct 3974 AGTGTCAAATATGCCCTCAATGCTGTCATCTTTCATAGCAATCAAGAAACAACTTGCCAA 4033 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 ||| | || | ||||||||| | || || || |||||||||||||| ||||| Sbjct 4034 TTGTCCTTTAGGAAGACATGAATTAAACAGGGTGGGGGTTGCATGAGTATAATAACCTTC 4093 >seq34305 Length=4887 Score = 172 bits (190), Expect = 3e-38 Identities = 326/480 (68%), Gaps = 0/480 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| || | ||| |||||| ||| |||||| | | |||||||||||| | Sbjct 1338 ATTTGGGCACATTAAGGACCAATCCTCATCGGCTTCAACTCTTTTCATAAATAAATCAGA 1279 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||||| || ||||| || ||||| ||||| || ||||| ||||| ||| ||| | Sbjct 1278 AATCCACAAGGCGTAAAACAAGTCTCTAGCTCTTATCTCTTCATTTCCCACATTTTTTCT 1219 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||| ||||| || |||||||||| | |||||||| || | ||| |||||||| ||||| Sbjct 1218 TAGCTCTAAAAATGCAAAAATATCCGCATGCCATGGCTCAAGATAAATAGCAAAGCTACC 1159 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | | || |||||| ||||| ||||||| | | | ||| || || | |||| Sbjct 1158 TGGGCGCTTATTTCCACCCTGATCAACGTATCGCGAAACATTATTAAAGACCCTTAACAA 1099 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||||| | || | ||||| || || | ||| | || || | | | ||| Sbjct 1098 TGGAACAAGGCCGTTCGAAAAACCACAAGTACCCGCAATATACGAGCCAGAAGCCCGAAT 1039 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 || ||| ||| | || ||||| ||||| ||| || || ||||| || ||| Sbjct 1038 ATTATGAAGATGCAATCCAATTCCTCCAGCGTGTTTCGATATCATAGCACATTCCTTAAC 979 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 || || || || || | ||||| ||| ||||||| | | || |||||| | || Sbjct 978 AGTGTCAAATATGCCCTCAATGCTGTCATCTTTCATAGCAATCAAGAAACAACTTGCCAA 919 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 ||| | || | ||||||||| | || || || |||||||||||||| ||||| Sbjct 918 TTGTCCTTTAGGAAGACATGAATTAAACAGGGTGGGGGTTGCATGAGTATAATAACCTTC 859 >seq31035 Length=4879 Score = 172 bits (190), Expect = 3e-38 Identities = 326/480 (68%), Gaps = 0/480 (0%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| || | ||| |||||| ||| |||||| | | |||||||||||| | Sbjct 3550 ATTTGGGCACATTAAGGACCAATCCTCATCGGCTTCAACTCTTTTCATAAATAAATCAGA 3609 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||||| || ||||| || ||||| ||||| || ||||| ||||| ||| ||| | Sbjct 3610 AATCCACAAGGCGTAAAACAAGTCTCTAGCTCTTATCTCTTCATTTCCCACATTTTTTCT 3669 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||| ||||| || |||||||||| | |||||||| || | ||| |||||||| ||||| Sbjct 3670 TAGCTCTAAAAATGCAAAAATATCCGCATGCCATGGCTCAAGATAAATAGCAAAGCTACC 3729 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | | || |||||| ||||| ||||||| | | | ||| || || | |||| Sbjct 3730 TGGGCGCTTATTTCCACCCTGATCAACGTATCGCGAAACATTATTAAAGACCCTTAACAA 3789 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||||| | || | ||||| || || | ||| | || || | | | ||| Sbjct 3790 TGGAACAAGGCCGTTCGAAAAACCACAAGTACCCGCAATATACGAGCCAGAAGCCCGAAT 3849 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 || ||| ||| | || ||||| ||||| ||| || || ||||| || ||| Sbjct 3850 ATTATGAAGATGCAATCCAATTCCTCCAGCGTGTTTCGATATCATAGCACATTCCTTAAC 3909 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 || || || || || | ||||| ||| ||||||| | | || |||||| | || Sbjct 3910 AGTGTCAAATATGCCCTCAATGCTGTCATCTTTCATAGCAATCAAGAAACAACTTGCCAA 3969 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 ||| | || | ||||||||| | || || || |||||||||||||| ||||| Sbjct 3970 TTGTCCTTTAGGAAGACATGAATTAAACAGGGTGGGGGTTGCATGAGTATAATAACCTTC 4029 >seq31034 Length=4877 Score = 172 bits (190), Expect = 3e-38 Identities = 326/480 (68%), Gaps = 0/480 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| || | ||| |||||| ||| |||||| | | |||||||||||| | Sbjct 1264 ATTTGGGCACATTAAGGACCAATCCTCATCGGCTTCAACTCTTTTCATAAATAAATCAGA 1205 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||||| || ||||| || ||||| ||||| || ||||| ||||| ||| ||| | Sbjct 1204 AATCCACAAGGCGTAAAACAAGTCTCTAGCTCTTATCTCTTCATTTCCCACATTTTTTCT 1145 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||| ||||| || |||||||||| | |||||||| || | ||| |||||||| ||||| Sbjct 1144 TAGCTCTAAAAATGCAAAAATATCCGCATGCCATGGCTCAAGATAAATAGCAAAGCTACC 1085 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | | || |||||| ||||| ||||||| | | | ||| || || | |||| Sbjct 1084 TGGGCGCTTATTTCCACCCTGATCAACGTATCGCGAAACATTATTAAAGACCCTTAACAA 1025 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||||| | || | ||||| || || | ||| | || || | | | ||| Sbjct 1024 TGGAACAAGGCCGTTCGAAAAACCACAAGTACCCGCAATATACGAGCCAGAAGCCCGAAT 965 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 || ||| ||| | || ||||| ||||| ||| || || ||||| || ||| Sbjct 964 ATTATGAAGATGCAATCCAATTCCTCCAGCGTGTTTCGATATCATAGCACATTCCTTAAC 905 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 || || || || || | ||||| ||| ||||||| | | || |||||| | || Sbjct 904 AGTGTCAAATATGCCCTCAATGCTGTCATCTTTCATAGCAATCAAGAAACAACTTGCCAA 845 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 ||| | || | ||||||||| | || || || |||||||||||||| ||||| Sbjct 844 TTGTCCTTTAGGAAGACATGAATTAAACAGGGTGGGGGTTGCATGAGTATAATAACCTTC 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252821306542550