Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq61479 89.7 6e-13 seq8514 89.7 6e-13 >seq61479 Length=12598 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 ||||| |||||||| |||| || | || || || || || || ||| || || Sbjct 6887 AAAGATGCGGTTGATGTTGAAAAGGAATTTTTCAGTGAAGCTCTTCCTGTTAAACTTATT 6946 Query 65350 GGTATGAACTCTGA-GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAA 65408 || ||||| | ||| | | |||| || |||||||| | ||| | ||| | ||| | | Sbjct 6947 GGAATGAA-TGTGAAGGATATGTGTGATTACATTGAATTTGTTGCTGATAGGCTCATGAT 7005 Query 65409 ACAAGTTGGGGT--GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAAC 65466 | || ||||| || | |||||||| || || || ||||| |||||||||||| Sbjct 7006 AGAACTTGGGTACAGCAAAATCTTTGGAAC-CGTT-AACCCTTTTGATTTTATGGAAAAC 7063 Query 65467 ATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 || ||||| |||||||||||||| ||||| ||||| ||| ||| ||| Sbjct 7064 ATCTCTCTTGAAGGGAAGACCAACTTTTTTGAAAAGCGTGTTTCGGAATAT 7114 >seq8514 Length=8580 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 ||||| |||||||| |||| || | || || || || || || ||| || || Sbjct 5928 AAAGATGCGGTTGATGTTGAAAAGGAATTTTTCAGTGAAGCTCTTCCTGTTAAACTTATT 5869 Query 65350 GGTATGAACTCTGA-GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAA 65408 || ||||| | ||| | | |||| || |||||||| | ||| | ||| | ||| | | Sbjct 5868 GGAATGAA-TGTGAAGGATATGTGTGATTACATTGAATTTGTTGCTGATAGGCTCATGAT 5810 Query 65409 ACAAGTTGGGGT--GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAAC 65466 | || ||||| || | |||||||| || || || ||||| |||||||||||| Sbjct 5809 AGAACTTGGGTACAGCAAAATCTTTGGAAC-CGTT-AACCCTTTTGATTTTATGGAAAAC 5752 Query 65467 ATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 || ||||| |||||||||||||| ||||| ||||| ||| ||| ||| Sbjct 5751 ATCTCTCTTGAAGGGAAGACCAACTTTTTTGAAAAGCGTGTTTCGGAATAT 5701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596040785792320