Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq43997 170 3e-37 seq43996 170 3e-37 seq33280 163 5e-35 >seq43997 Length=5328 Score = 170 bits (188), Expect = 3e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || ||||||| || |||| ||| || || | ||||| ||| ||||||||| | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || |||||||| ||||| || || |||||||||||||| ||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || ||||| || ||||| ||||| | || ||| ||||| ||||||||||| Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| |||||||| | |||||||||||| || | ||||| |||||| Sbjct 5058 AATTTGCATACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATT 5117 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||| || ||||| ||| || | || || || ||||| || | || || || Sbjct 5118 GTAATCGCTCAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTG 5177 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || || || ||||| || || || | ||| | ||| ||| || || || Sbjct 5178 ATCAGGAGGAATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGA 5237 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || |||||||||||||| || || || ||||| |||||||| ||||| Sbjct 5238 TGACTCAACATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| || || || |||| ||||| || | || || |||||||| || Sbjct 4837 ATGCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCA 4896 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || ||||| ||| || | || || || ||||| || | || || ||||||||| Sbjct 4897 CTCAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGA 4956 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || || | ||| | ||| || || || || || ||| Sbjct 4957 GGAATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCA 5016 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||||||||| || || || ||||| ||||| |||||||| Sbjct 5017 ACATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq43996 Length=5100 Score = 170 bits (188), Expect = 3e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || ||||||| || |||| ||| || || | ||||| ||| ||||||||| | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || |||||||| ||||| || || |||||||||||||| ||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || ||||| || ||||| ||||| | || ||| ||||| ||||||||||| Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| || || || |||| ||||| || | || || |||||||| || Sbjct 4837 ATGCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCA 4896 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || ||||| ||| || | || || || ||||| || | || || ||||||||| Sbjct 4897 CTCAAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGA 4956 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || || | ||| | ||| || || || || || ||| Sbjct 4957 GGAATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCA 5016 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||||||||| || || || ||||| |||||||| ||||| Sbjct 5017 ACATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 >seq33280 Length=5083 Score = 163 bits (180), Expect = 5e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||||||||| || ||||| | |||| ||| || |||||| Sbjct 169 AATTTGCATCCCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATT 228 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||| ||| || || ||| |||||||| || || |||||||| | |||||| || Sbjct 229 ATAGTCGCTTAAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTG 288 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| ||||| | ||| | ||| ||| || || Sbjct 289 GTCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGTCACT 348 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || ||||| ||||| ||||| || | || || ||||||||||||||| Sbjct 349 GCTCTCAACATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || | |||||||| || ||||| | |||||| ||||||||||| Sbjct 11 AAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGA 70 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| || || || || ||||| ||||| | ||| ||| || || || || ||||| Sbjct 71 ATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACG 130 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||| || |||| |||||| ||||| |||||||| Sbjct 131 TCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898856923848480