Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq33280 125 1e-23 seq43997 120 5e-22 seq43996 120 5e-22 >seq33280 Length=5083 Score = 125 bits (138), Expect = 1e-23 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | ||| | || | ||||| ||||| ||| || ||||||||| || Sbjct 176 ATCCCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTC- 234 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | | ||| || | | || || ||||| |||||||||||||| | |||||| ||||| || Sbjct 235 GCTTAAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGG 294 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC-GAT- 172016 || || ||||| || ||||| |||||| ||| ||||| || || || || | | Sbjct 295 AGGAATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGTC--ACTGCTC 352 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || |||||||| || |||||||| || || || | ||||| |||||| Sbjct 353 TCAACATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCATT 406 >seq43997 Length=5328 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||||||||| | ||||| ||| ||||| || ||| | || | | || ||| Sbjct 4630 ACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCCTCC 4689 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||| || || || || ||||||||||| || || || || || || ||||| || Sbjct 4690 AATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATCCTGA 4749 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| |||| || || || ||||| || || || || || || || || ||||| Sbjct 4750 ATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTTTTC 4809 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| | ||||||||||| Sbjct 4810 CCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | ||||||||| | ||| ||||| | ||||| |||||| ||||| Sbjct 5065 ATACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCG 5124 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || | | || || | || || |||||||| || | || || || ||||| Sbjct 5125 CTCAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGA 5184 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || ||| || || || || || || || || Sbjct 5185 GGAATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCA 5244 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| ||||| | ||||||| ||||||||||| Sbjct 5245 ACATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 >seq43996 Length=5100 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||||||||| | ||||| ||| ||||| || ||| | || | | || ||| Sbjct 4630 ACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCCTCC 4689 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||| || || || || ||||||||||| || || || || || || ||||| || Sbjct 4690 AATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATCCTGA 4749 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| |||| || || || ||||| || || || || || || || || ||||| Sbjct 4750 ATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTTTTC 4809 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| | ||||||||||| Sbjct 4810 CCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904333664821200