Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq43996 141 8e-29 seq43997 136 4e-27 seq54562 105 6e-18 seq39983 105 6e-18 seq34305 105 6e-18 seq31035 105 6e-18 seq31034 105 6e-18 seq33280 87.8 2e-12 >seq43996 Length=5100 Score = 141 bits (156), Expect = 8e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || |||||||| || || || || ||| | | Sbjct 5066 ATGCAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| |||||| || || || || || || ||||| ||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || ||||| |||||| |||| | || |||||||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || ||||||||||| || || || ||||| |||| || Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTT 4849 Score = 123 bits (136), Expect = 2e-23 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| || || || || || || | | Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| |||||| ||| || || || || || || || ||||| ||||| Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAA-ATTCAGGATAAGGAGGGTATTCCTCCGGATCA 4720 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG--ATTAT 24880 ||| | ||||| || ||||||||||| |||||||| |||| ||| | || | ||| Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAA-CAT-TAAGCGACTAT 4662 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| || ||||| || |||| ||||| || ||||| | ||||| Sbjct 4661 AACATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 >seq43997 Length=5328 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| || || || |||||||| || || || || ||| | | Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| |||||| || || || || || || ||||| ||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || ||||| |||||| |||| | || |||||||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || ||||||||||| || || || ||||| |||| || Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTT 4849 Score = 123 bits (136), Expect = 2e-23 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| || || || || || || | | Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| |||||| ||| || || || || || || || ||||| ||||| Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAA-ATTCAGGATAAGGAGGGTATTCCTCCGGATCA 4720 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG--ATTAT 24880 ||| | ||||| || ||||||||||| |||||||| |||| ||| | || | ||| Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAA-CAT-TAAGCGACTAT 4662 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| || ||||| || |||| ||||| || ||||| | ||||| Sbjct 4661 AACATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 >seq54562 Length=4898 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138406 GCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTAC 138465 ||||| ||||||| || ||| ||||| | |||||||||||||||| || | Sbjct 2556 GCAATGTTTTGAACCGATCCATTGTTAGCAATAAGTTGATTTCTCATGTCATCATTCCAT 2615 Query 138466 AGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC 138525 | ||| || || ||||| || | | |||| ||| || | |||||||| ||||| || Sbjct 2616 ATATTTAAATTAATCAAATCACTCAAAAGATGTCTATTAACAACCTGAAAATCACCAGCT 2675 Query 138526 AATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGA 138585 |||||||| | | ||| || ||| | ||| |||| |||| |||||| || || || ||| Sbjct 2676 AATACTCGTCTAGAGTATATATTGGTAGTGTAAGGTTCAATCGATTCATTATTGCCAAGA 2735 Query 138586 ATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || |||| || | || || ||||| Sbjct 2736 ATTTGAGAAGTTGAAGCAGTAGGCAT 2761 >seq39983 Length=4877 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138406 GCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTAC 138465 ||||| ||||||| || ||| ||||| | |||||||||||||||| || | Sbjct 2535 GCAATGTTTTGAACCGATCCATTGTTAGCAATAAGTTGATTTCTCATGTCATCATTCCAT 2594 Query 138466 AGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC 138525 | ||| || || ||||| || | | |||| ||| || | |||||||| ||||| || Sbjct 2595 ATATTTAAATTAATCAAATCACTCAAAAGATGTCTATTAACAACCTGAAAATCACCAGCT 2654 Query 138526 AATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGA 138585 |||||||| | | ||| || ||| | ||| |||| |||| |||||| || || || ||| Sbjct 2655 AATACTCGTCTAGAGTATATATTGGTAGTGTAAGGTTCAATCGATTCATTATTGCCAAGA 2714 Query 138586 ATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || |||| || | || || ||||| Sbjct 2715 ATTTGAGAAGTTGAAGCAGTAGGCAT 2740 >seq34305 Length=4887 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 138406 GCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTAC 138465 ||||| ||||||| || ||| ||||| | |||||||||||||||| || | Sbjct 2417 GCAATGTTTTGAACCGATCCATTGTTAGCAATAAGTTGATTTCTCATGTCATCATTCCAT 2358 Query 138466 AGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC 138525 | ||| || || ||||| || | | |||| ||| || | |||||||| ||||| || Sbjct 2357 ATATTTAAATTAATCAAATCACTCAAAAGATGTCTATTAACAACCTGAAAATCACCAGCT 2298 Query 138526 AATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGA 138585 |||||||| | | ||| || ||| | ||| |||| |||| |||||| || || || ||| Sbjct 2297 AATACTCGTCTAGAGTATATATTGGTAGTGTAAGGTTCAATCGATTCATTATTGCCAAGA 2238 Query 138586 ATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || |||| || | || || ||||| Sbjct 2237 ATTTGAGAAGTTGAAGCAGTAGGCAT 2212 >seq31035 Length=4879 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138406 GCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTAC 138465 ||||| ||||||| || ||| ||||| | |||||||||||||||| || | Sbjct 2471 GCAATGTTTTGAACCGATCCATTGTTAGCAATAAGTTGATTTCTCATGTCATCATTCCAT 2530 Query 138466 AGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC 138525 | ||| || || ||||| || | | |||| ||| || | |||||||| ||||| || Sbjct 2531 ATATTTAAATTAATCAAATCACTCAAAAGATGTCTATTAACAACCTGAAAATCACCAGCT 2590 Query 138526 AATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGA 138585 |||||||| | | ||| || ||| | ||| |||| |||| |||||| || || || ||| Sbjct 2591 AATACTCGTCTAGAGTATATATTGGTAGTGTAAGGTTCAATCGATTCATTATTGCCAAGA 2650 Query 138586 ATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || |||| || | || || ||||| Sbjct 2651 ATTTGAGAAGTTGAAGCAGTAGGCAT 2676 >seq31034 Length=4877 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 138406 GCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTAC 138465 ||||| ||||||| || ||| ||||| | |||||||||||||||| || | Sbjct 2343 GCAATGTTTTGAACCGATCCATTGTTAGCAATAAGTTGATTTCTCATGTCATCATTCCAT 2284 Query 138466 AGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC 138525 | ||| || || ||||| || | | |||| ||| || | |||||||| ||||| || Sbjct 2283 ATATTTAAATTAATCAAATCACTCAAAAGATGTCTATTAACAACCTGAAAATCACCAGCT 2224 Query 138526 AATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGA 138585 |||||||| | | ||| || ||| | ||| |||| |||| |||||| || || || ||| Sbjct 2223 AATACTCGTCTAGAGTATATATTGGTAGTGTAAGGTTCAATCGATTCATTATTGCCAAGA 2164 Query 138586 ATCTGAGCCGTGGTCGCGGTCGGCAT 138611 || |||| || | || || ||||| Sbjct 2163 ATTTGAGAAGTTGAAGCAGTAGGCAT 2138 >seq33280 Length=5083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || ||||| |||||||| || || || || || Sbjct 405 ATGCAAATATTTGTGAAGACTTTGACTGGTAAGACTATTACTCTTGATGTTGAGAGCAGT 346 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | |||| | ||| || |||||||| ||||| || ||||| || || Sbjct 345 GACACGATTGAGAATGTTAAATCTAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 287 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | || ||||| || || || | || ||| ||| | | | || ||||| Sbjct 286 GCAGAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGGAGGACCTTAAGCGACTATAA 227 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || ||||| |||| | || |||||| | || || Sbjct 226 TATTCAAAAGGAGTCTACTCTACATCTTGTTCTT-CGATTGAGAGGTGG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449498799519920