Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq43996 174 1e-38 seq43997 165 6e-36 seq33280 118 8e-22 >seq43996 Length=5100 Score = 174 bits (192), Expect = 1e-38 Identities = 179/229 (78%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || || || |||||||| |||||||| || |||||||| ||||| || |||||||| | | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | ||| ||||| || ||||| ||| | || | ||||||||||| || || Sbjct 4900 AA-GGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGG 4958 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||| || || || ||| |||| ||| || |||| | |||||||| ||| | Sbjct 4959 AATGCCCTCCTTATCCTG-AATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAA 5017 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||||||||| ||||| | |||||||||||||||||||| Sbjct 5018 CATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 Score = 165 bits (182), Expect = 6e-36 Identities = 177/229 (77%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||||||||| | ||| |||||||| | ||||||||||| ||||||||||| || | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | ||| || | |||||| || || |||||||||| || |||||||| || Sbjct 4672 AATGTT-CTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGG 4730 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| || || || |||||| |||| | ||| || | || |||||| || | Sbjct 4731 AATACCCTCCTTATCCTG-AATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAA 4789 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| ||||| ||||| | |||||| |||||||||||||| Sbjct 4790 CGTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43997 Length=5328 Score = 165 bits (182), Expect = 6e-36 Identities = 177/229 (77%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||||||||| | ||| |||||||| | ||||||||||| ||||||||||| || | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | ||| || | |||||| || || |||||||||| || |||||||| || Sbjct 4672 AATGTT-CTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGG 4730 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| || || || |||||| |||| | ||| || | || |||||| || | Sbjct 4731 AATACCCTCCTTATCCTG-AATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAA 4789 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| ||||| ||||| | |||||| |||||||||||||| Sbjct 4790 CGTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 165 bits (182), Expect = 6e-36 Identities = 177/229 (77%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || || || |||||||| |||||||| || |||||||| ||||| || |||||||| | | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | ||| ||||| || ||||| ||| | || | ||||||||||| || || Sbjct 4900 AA-GGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGG 4958 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||| || || || ||| |||| ||| || |||| | |||||||| ||| | Sbjct 4959 AATGCCCTCCTTATCCTG-AATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAA 5017 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||||||||| ||||| | ||||||||||| || ||||| Sbjct 5018 CATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 Score = 156 bits (172), Expect = 3e-33 Identities = 175/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || |||||||| || | |||| ||| | || |||||||| ||||| || ||||| | | Sbjct 5068 CCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTC 5127 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | | | ||| ||||| || ||||||||| | || | ||||||||||| || || Sbjct 5128 AAAGTT-CTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGG 5186 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| || || || ||| |||| ||| || |||| | |||||||| || | Sbjct 5187 AATACCCTCCTTATCCTG-AATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAA 5245 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||||||||| ||||| | |||||||||||||||||||| Sbjct 5246 CATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 >seq33280 Length=5083 Score = 118 bits (130), Expect = 8e-22 Identities = 122/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| ||||| | || | ||| |||||||| || ||||| ||||| || Sbjct 22 ATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTT 81 Query 29691 GTCTTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||||||||||| || |||| | |||||||| ||| || |||||||| | Sbjct 82 GTCCTG-AATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACGTCAAGAGTGA 140 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || ||||| ||||||||||| || ||||| Sbjct 141 TGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384886268768874