Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq40719 86.0 8e-12 seq28781 86.0 8e-12 seq28149 86.0 8e-12 seq19105 86.0 8e-12 >seq40719 Length=2306 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 168633 GGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 || ||| ||| || ||||||| ||| ||||||| | ||||| || |||||| ||||| Sbjct 823 GGCTTTCACGATCGAGAAGAAGGGGATCTAGGTCCGGTGTATGGGTTCCAATGGCGACAT 882 Query 168693 GCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 | |||| |||||||||| ||||||||||| |||||| ||| || |||||| Sbjct 883 TCTGGAGAAAAATATATTGATAAACATACAGATTACTCCGGACTAGGTGTTGACCAA 939 >seq28781 Length=2440 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 168633 GGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 || ||| ||| || ||||||| ||| ||||||| | ||||| || |||||| ||||| Sbjct 1747 GGCTTTCACGATCGAGAAGAAGGGGATCTAGGTCCGGTGTATGGGTTCCAATGGCGACAT 1688 Query 168693 GCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 | |||| |||||||||| ||||||||||| |||||| ||| || |||||| Sbjct 1687 TCTGGAGAAAAATATATTGATAAACATACAGATTACTCCGGACTAGGTGTTGACCAA 1631 >seq28149 Length=2306 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 168633 GGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 || ||| ||| || ||||||| ||| ||||||| | ||||| || |||||| ||||| Sbjct 1484 GGCTTTCACGATCGAGAAGAAGGGGATCTAGGTCCGGTGTATGGGTTCCAATGGCGACAT 1425 Query 168693 GCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 | |||| |||||||||| ||||||||||| |||||| ||| || |||||| Sbjct 1424 TCTGGAGAAAAATATATTGATAAACATACAGATTACTCCGGACTAGGTGTTGACCAA 1368 >seq19105 Length=4901 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 168633 GGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 || ||| ||| || ||||||| ||| ||||||| | ||||| || |||||| ||||| Sbjct 4208 GGCTTTCACGATCGAGAAGAAGGGGATCTAGGTCCGGTGTATGGGTTCCAATGGCGACAT 4149 Query 168693 GCAGGAGCTCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 | |||| |||||||||| ||||||||||| |||||| ||| || |||||| Sbjct 4148 TCTGGAGAAAAATATATTGATAAACATACAGATTACTCCGGACTAGGTGTTGACCAA 4092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634614562695920