Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq43996 170 4e-37 seq43997 161 2e-34 seq33280 118 2e-21 seq50184 98.7 2e-15 seq15988 98.7 2e-15 >seq43996 Length=5100 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| ||||||||||| || ||||| || ||||| || ||||||||||||||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || || || || || || || |||||||| || ||||| ||||| ||||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| |||||||||| ||| || ||||| || || ||| | ||| || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| || || || || | || || |||||||||||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| | ||| || || || | ||| ||||||||||| || ||||| || | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || || || | |||||| || || || || | ||| |||||||| ||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||| || | ||| || || |||||||||||| || || || Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || | || || |||||||||||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43997 Length=5328 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| ||||||||||| || ||||| || ||||| || ||||||||||||||| Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || || || || || || || |||||||| || ||||| ||||| ||||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| |||||||||| ||| || ||||| || || ||| | ||| || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| || || || || | || || ||||| || ||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || ||||| || | || | |||| ||| ||||||||||| ||||| ||||| Sbjct 5066 TACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGC 5125 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||| || || || || || || ||||||||||| || ||||| ||||| |||| Sbjct 5126 TCAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAG 5185 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| |||||||||| ||| || |||||||| || ||| | || | Sbjct 5186 GAATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAA 5245 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | |||||| || || || || | || || |||||||||||||| Sbjct 5246 CATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| | ||| || || || | ||| ||||||||||| || ||||| || | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || || || | |||||| || || || || | ||| |||||||| ||||| Sbjct 4672 AATGTTCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGA 4731 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||| || | ||| || || |||||||||||| || || || Sbjct 4732 ATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACG 4791 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || | || || |||||||||||||| Sbjct 4792 TCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq33280 Length=5083 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 82648 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 |||| || || || || ||||||||||| || || ||||| || ||||| ||||| |||| Sbjct 15 TTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGAATTC 74 Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 | ||||| || ||||| |||| ||| || |||||||| || ||| | ||| || || | Sbjct 75 CCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACGTCAA 134 Query 82768 AAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || || || || ||||| || ||||| || ||||| Sbjct 135 GAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 >seq50184 Length=1264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 175/253 (69%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 198375 GGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAA-G 198433 ||||||||| | | | |||| ||||||||||||| |||||| | || || ||| ||| | Sbjct 1001 GGAAAAATGGCTGGGTATTTACGAATGTACTGGGCCAAAAAGTTTCTGGAGTGGTCAAAG 1060 Query 198434 AACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGG 198493 ||| || ||| | || | | || || | || || ||| ||| ||| | ||||| Sbjct 1061 AAC-CCTGAACAAGCCTATCGGAATTGTCTTTACCTGAACGATAGATACAGTTTGGACGG 1119 Query 198494 CACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGC 198553 | ||||||||| ||| |||||||||||||| || | || | ||||| || | Sbjct 1120 TAACACCCCTAACGGAATCGTTGGTTGTATGTGGTCCATGTATGGGCTGCATGACCGTCC 1179 Query 198554 GTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAA 198613 ||| ||||| ||||| ||||| | || ||||| ||||| | || | ||| | Sbjct 1180 CTGGGGTGAAAGGCCTATTTTTGGCTATATCAGATACATGAACGAAACTGGATGTAAAAG 1239 Query 198614 AAAATTTGATGTT 198626 | | ||||||||| Sbjct 1240 ACACTTTGATGTT 1252 >seq15988 Length=1264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 175/253 (69%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 198375 GGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAA-G 198433 ||||||||| | | | |||| ||||||||||||| |||||| | || || ||| ||| | Sbjct 264 GGAAAAATGGCTGGGTATTTACGAATGTACTGGGCCAAAAAGTTTCTGGAGTGGTCAAAG 205 Query 198434 AACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGG 198493 ||| || ||| | || | | || || | || || ||| |||| ||| | ||||| Sbjct 204 AAC-CCTGAACAAGCCTATCGGAATTGTCTTTACCTGAACGATAAATACAGTTTGGACGG 146 Query 198494 CACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGC 198553 | ||||||||| |||||| ||||||||||| || | || | ||||| || | Sbjct 145 TAACACCCCTAACGGAATCGTAGGCTGTATGTGGTCCATGTATGGGCTGCATGACCGTCC 86 Query 198554 GTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAA 198613 ||| ||||| ||||| || || | || ||||| ||||| | || | ||| | Sbjct 85 CTGGGGTGAAAGGCCTATTTTCGGCTATATCAGATACATGAACGAAACTGGATGTAAAAG 26 Query 198614 AAAATTTGATGTT 198626 | | ||||||||| Sbjct 25 ACACTTTGATGTT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980935125919846