Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq50136 104 6e-17 seq11208 104 6e-17 >seq50136 Length=15282 Score = 104 bits (114), Expect = 6e-17 Identities = 180/258 (70%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC---AGGCA 304942 ||||| || ||| |||| || || || ||||||||||| ||||| | ||| || | Sbjct 2998 TTACAGTACCATGTTGCTACTTTTATTGATAATGAAATCGCTGG---TTTGCCTAAGTCT 3054 Query 304943 TCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 | |||| |||||| || ||| | ||| | | | ||||| | ||| |||| || || Sbjct 3055 TGCCAAAAATCTGGAAGGCCTCTGAAGTCTTTAAAACAACGTCTAAAAAGTAAGGAAGGA 3114 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACA 305062 ||| | |||| ||||| ||||| |||||||| ||| |||||| | | |||||||| Sbjct 3115 CGTGTAAGAGGAAATCTTATGGGTAAACGTGTCGATCATAGTGCTCGTACAGTAATCACT 3174 Query 305063 CCTGATTCTCAAATTAG-TCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACT 305121 ||||| || || || | | | |||| | |||||||| | || ||| | || || Sbjct 3175 CCTGA-TCCAAACTTGGATTTGGATGAGGTTGGAGTTCCTAAGTCCATCGCTATGAATCT 3233 Query 305122 AACATTTCCAGAGAAAGT 305139 || ||||| |||| ||| Sbjct 3234 TACCTTTCCTGAGATAGT 3251 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | || ||| |||| ||||||||||| ||||||| ||| | ||| | Sbjct 3442 TTTAATCGTCAGCCAACACTTCATAAAATGTCAATGATGGGGCATCGGATTCGTGTACTT 3501 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||| ||||||| | |||| | ||| ||||||||||| ||||| || Sbjct 3502 CCTTGGTCAACTTTTAGATTAAACCTTAGTGTTACTACTCCTTATAATGCCGATTTCGAC 3561 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||||| |||||| ||||||| || Sbjct 3562 GGGGATGAAATGAACATGCATATACCTCAGTC 3593 >seq11208 Length=9835 Score = 104 bits (114), Expect = 6e-17 Identities = 180/258 (70%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC---AGGCA 304942 ||||| || ||| |||| || || || ||||||||||| ||||| | ||| || | Sbjct 3087 TTACAGTACCATGTTGCTACTTTTATTGATAATGAAATCGCTGG---TTTGCCTAAGTCT 3143 Query 304943 TCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 | |||| |||||| || ||| | ||| | | | ||||| | ||| |||| || || Sbjct 3144 TGCCAAAAATCTGGAAGGCCTCTGAAGTCTTTAAAACAACGTCTAAAAAGTAAGGAAGGA 3203 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACA 305062 ||| | |||| ||||| ||||| |||||||| ||| |||||| | | |||||||| Sbjct 3204 CGTGTAAGAGGAAATCTTATGGGTAAACGTGTCGATCATAGTGCTCGTACAGTAATCACT 3263 Query 305063 CCTGATTCTCAAATTAG-TCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACT 305121 ||||| || || || | | | |||| | |||||||| | || ||| | || || Sbjct 3264 CCTGA-TCCAAACTTGGATTTGGATGAGGTTGGAGTTCCTAAGTCCATCGCTATGAATCT 3322 Query 305122 AACATTTCCAGAGAAAGT 305139 || ||||| |||| ||| Sbjct 3323 TACCTTTCCTGAGATAGT 3340 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | || ||| |||| ||||||||||| ||||||| ||| | ||| | Sbjct 3531 TTTAATCGTCAGCCAACACTTCATAAAATGTCAATGATGGGGCATCGGATTCGTGTACTT 3590 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||| ||||||| | |||| | ||| ||||||||||| ||||| || Sbjct 3591 CCTTGGTCAACTTTTAGATTAAACCTTAGTGTTACTACTCCTTATAATGCCGATTTCGAC 3650 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||||| |||||| ||||||| || Sbjct 3651 GGGGATGAAATGAACATGCATATACCTCAGTC 3682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185734478950354